RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA1010662", tax_kingdom = "Bacillati" and tax_phylum = "Armatimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA1010662 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19280498 19280498 PRJNA1010662_P_NODE_9976_length_185_cov_0.882353_g9917_i0 PRJNA1010662 9976 185 0.882353 1.63235305 Fimbriimonas ginsengisoli 1005039 Bacteria Bacteria 76.8 9.37e-10   NTclustered gi|663071213|gb|CP007139.1| 661478 g9917 i0 95.745 14.572972972973 47 2 25 0 61 107 3883344 3883298 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 2696 76.8 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli
30603124 30603124 PRJNA1010662_P_NODE_933_length_523_cov_2.453586_g874_i0 PRJNA1010662 933 523 2.453586 12.83225478 Armatimonadota bacterium 2033014 Bacteria Bacteria 117 1.41e-27   NR MBM3464694.1 2033014 g874 i0 70 2.2887189292543 80 24 45.9 0 518 279 368 447 MBM3464694.1 aspartate aminotransferase family protein [Armatimonadota bacterium] diamond 1197 117 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
30824385 30824385 PRJNA1010662_P_NODE_4774_length_244_cov_1.348718_g4715_i0 PRJNA1010662 4774 244 1.348718 3.29087192 Fimbriimonas sp. 1936159 Bacteria Bacteria 44.3 0.0102   NR MDR3692191.1 1936159 g4715 i0 32 0.922131147540984 75 51 92.2 0 228 4 44 118 MDR3692191.1 DUF1684 domain-containing protein [Fimbriimonas sp.] diamond 225 44.3 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;