RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA1010662", tax_clade = "Sar" and tax_phylum = "Endomyxa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1010662 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21831737 21831737 PRJNA1010662_P_NODE_8978_length_192_cov_1.090909_g8919_i0 PRJNA1010662 8978 192 1.090909 2.09454528 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 105 5.04e-26   NR CEP00157.1 37360 g8919 i0 84.4 4 64 10 100 0 192 1 33 96 CEP00157.1 hypothetical protein PBRA_007891 [Plasmodiophora brassicae] diamond 768 105 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
29364031 29364031 PRJNA1010662_P_NODE_12649_length_169_cov_0.866667_g12590_i0 PRJNA1010662 12649 169 0.866667 1.46466723 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 55.5 4.3e-7   NR CEO94832.1 37360 g12590 i0 46.6 5.02366863905325 58 28 97.6 1 167 3 284 341 CEO94832.1 hypothetical protein PBRA_003645 [Plasmodiophora brassicae] diamond 849 55.8 0.99462365591397806 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
30563850 30563850 PRJNA1010662_P_NODE_16933_length_162_cov_0.902655_g16874_i0 PRJNA1010662 16933 162 0.902655 1.4623011 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 79 2.09e-15   NR SPQ95768.1 37360 g16874 i0 73.1 9.74074074074074 52 14 96.3 0 160 5 98 149 SPQ95768.1 unnamed protein product [Plasmodiophora brassicae] diamond 1578 79.7 0.991217063989962 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
32784175 32784175 PRJNA1010662_P_NODE_4620_length_247_cov_1.909091_g4561_i0 PRJNA1010662 4620 247 1.909091 4.71545477 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 114 6.94e-28   NR SPQ96300.1 37360 g4561 i0 64.2 4.91902834008097 81 29 98.4 0 3 245 249 329 SPQ96300.1 unnamed protein product [Plasmodiophora brassicae] diamond 1215 114 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;