RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1010662", tax_clade = "PVC group" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA1010662 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27216437 27216437 PRJNA1010662_P_NODE_8182_length_199_cov_1.380000_g8123_i0 PRJNA1010662 8182 199 1.38 2.7462 Bacteria 2 Bacteria Bacteria 93.2 3.43e-20   NR MBR0459803.1 2212475 g8123 i0 67.7 4.89949748743719 65 21 98 0 197 3 104 168 MBR0459803.1 glutamine synthetase III [Victivallales bacterium] diamond 975 93.2 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales     Victivallales bacterium
30595573 30595573 PRJNA1010662_P_NODE_11193_length_176_cov_1.669291_g11134_i0 PRJNA1010662 11193 176 1.669291 2.93795216 Bacteria 2 Bacteria Bacteria 70.9 9.53e-13   NR MBQ6599828.1 2053569 g11134 i0 58.6 4.94318181818182 58 24 98.9 0 175 2 115 172 MBQ6599828.1 glutamine synthetase type III [Lentisphaeria bacterium] diamond 870 70.9 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;