RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1010662", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA1010662 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27729883 27729883 PRJNA1010662_P_NODE_10724_length_179_cov_1.592308_g10665_i0 PRJNA1010662 10724 179 1.592308 2.85023132 Rhabdochlamydiaceae bacterium 2047756 Bacteria Bacteria 47.8 2.7e-4   NR HEY2811008.1 2047756 g10665 i0 47.3 0.921787709497207 55 28 90.5 1 164 3 6 60 HEY2811008.1 hypothetical protein [Rhabdochlamydiaceae bacterium] diamond 165 47.8 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae   Rhabdochlamydiaceae bacterium
27824419 27824419 PRJNA1010662_P_NODE_584_length_648_cov_9.732888_g532_i0 PRJNA1010662 584 648 9.732888 63.06911424 Chlamydiales bacterium 2047757 Bacteria Bacteria 201 3.8e-62   NR MCP5470421.1 2047757 g532 i0 66 0.736111111111111 159 49 72.2 2 624 157 1 157 MCP5470421.1 hypothetical protein [Chlamydiales bacterium] diamond 477 201 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
31930979 31930979 PRJNA1010662_P_NODE_1437_length_425_cov_7.625000_g1378_i0 PRJNA1010662 1437 425 7.625 32.40625 Chlamydiales bacterium 2047757 Bacteria Bacteria 193 2.45e-60   NR MCP5470421.1 2047757 g1378 i0 74.6 1.83529411764706 130 33 91.8 0 404 15 1 130 MCP5470421.1 hypothetical protein [Chlamydiales bacterium] diamond 780 193 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;