RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1010662", tax_clade = "Nitrospinota/Tectimicrobiota group" and tax_kingdom = "Pseudomonadati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pseudomonadati · 3 ✖

tax_clade 1

  • Nitrospinota/Tectimicrobiota group · 3 ✖

bioproject 1

  • PRJNA1010662 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3552002 3552002 PRJNA1010662_P_NODE_12043_length_171_cov_1.631148_g11984_i0 PRJNA1010662 12043 171 1.631148 2.78926308 Bacteria 2 Bacteria Bacteria 108 2.02e-27   NR MCA9482431.1 2024844 g11984 i0 90.9 7.71929824561404 55 5 96.5 0 169 5 81 135 MCA9482431.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase [Nitrospina sp.] diamond 1320 109 0.990825688073395 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota Nitrospinia Nitrospinales Nitrospinaceae Nitrospina Nitrospina sp.
20556061 20556061 PRJNA1010662_P_NODE_2457_length_327_cov_2.971223_g2398_i0 PRJNA1010662 2457 327 2.971223 9.71589921 Pseudomonadati 3379134 Bacteria Bacteria 181 5.36e-53   NR MDH5541907.1 2026769 g2398 i0 89.1 22.3394495412844 101 11 92.7 0 304 2 8 108 MDH5541907.1 adenosylhomocysteinase [Nitrospinota bacterium] diamond 7305 181 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota         Nitrospinota bacterium
27753819 27753819 PRJNA1010662_P_NODE_11124_length_177_cov_1.203125_g11065_i0 PRJNA1010662 11124 177 1.203125 2.12953125 Bacteria 2 Bacteria Bacteria 66.6 3.55e-11   NR MBR34384.1 2026769 g11065 i0 52.7 7.64406779661017 55 26 93.2 0 3 167 43 97 MBR34384.1 asparagine--tRNA ligase [Nitrospinota bacterium] diamond 1353 66.6 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota         Nitrospinota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;