RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1010662", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA1010662 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16731819 16731819 PRJNA1010662_P_NODE_4754_length_244_cov_2.487179_g4695_i0 PRJNA1010662 4754 244 2.487179 6.06871676 Gemmatimonas phototrophica 1379270 Bacteria Bacteria 60.2 1.32e-4   NTclustered gi|1015602748|gb|CP011454.1| 1379270 g4695 i0 100 0.25 32 0 13 0 93 124 2799200 2799231 Gemmatimonas phototrophica strain AP64, complete genome blastn 61 60.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas phototrophica
27382300 27382300 PRJNA1010662_P_NODE_14503_length_165_cov_1.750000_g14444_i0 PRJNA1010662 14503 165 1.75 2.8875 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 44.7 0.00266   NR MEX0980310.1 2026742 g14444 i0 60 2.6 30 12 54.5 0 130 41 320 349 MEX0980310.1 alanine racemase [Gemmatimonadota bacterium] diamond 429 44.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
28045214 28045214 PRJNA1010662_P_NODE_14825_length_165_cov_0.887931_g14766_i0 PRJNA1010662 14825 165 0.887931 1.46508615 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 63.2 8.32e-10   NR MEW5925949.1 2026742 g14766 i0 65.9 0.745454545454545 41 14 74.5 0 132 10 1665 1705 MEW5925949.1 amino acid adenylation domain-containing protein [Gemmatimonadota bacterium] diamond 123 63.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;