RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1009807" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1009807 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
154833 154833 PRJNA1009807_S_NODE_3981_length_165_cov_2.539683_g3953_i0 PRJNA1009807 3981 165 2.539683 4.19047695 Pseudogemmatithrix spongiicola 3062599 Bacteria Bacteria 228 2.139999999999999e-55   NTclustered gi|2557479348|gb|CP130613.1| 3062599 g3953 i0 91.566 15.1757575757576 166 12 100 2 1 165 1553076 1553240 Pseudogemmatithrix spongiicola strain 318 chromosome, complete genome blastn 2504 228 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Pseudogemmatithrix Pseudogemmatithrix spongiicola
1001398 1001398 PRJNA1009807_S_NODE_2901_length_188_cov_1.335570_g2873_i0 PRJNA1009807 2901 188 1.33557 2.5108716 Gemmatimonas 173479 Bacteria Bacteria 196 7.029999999999999e-46   NTclustered gi|470475286|ref|NR_076270.1| 173480 g2873 i0 86.17 38.8829787234043 188 19 99 5 2 187 550 732 Gemmatimonas aurantiaca strain T-27 23S ribosomal RNA gene, complete sequence blastn 7310 196 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca
20555971 20555971 PRJNA1009807_S_NODE_1657_length_238_cov_1.814070_g1629_i0 PRJNA1009807 1657 238 1.81407 4.3174866 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 121 5.779999999999999e-23   NTclustered gi|2874253755|emb|OY969695.1| 412054 g1629 i0 76.613 1.16386554621849 248 40 100 17 1 238 342103 342342 MAG: uncultured Gemmatimonadales bacterium isolate MFD04967.bin.1.34 genome assembly, chromosome: 1 blastn 277 121 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;