RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1009807" and tax_phylum = "Chytridiomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1009807 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12908471 12908471 PRJNA1009807_S_NODE_1051_length_295_cov_23.511719_g1023_i0 PRJNA1009807 1051 295 23.511719 69.35957105 Gaertneriomyces semiglobifer 109897 Fungi Fungi 187 7.19e-43   NTclustered gi|82398216|gb|DQ273778.1| 109897 g1023 i0 94.958 40.8576271186441 119 6 40 0 3 121 2283 2165 Gaertneriomyces semiglobiferus isolate AFTOL-ID 34 28S ribosomal RNA gene, partial sequence blastn 12053 187 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Gaertneriomyces Gaertneriomyces semiglobifer
30666371 30666371 PRJNA1009807_S_NODE_2453_length_201_cov_1.746914_g2425_i0 PRJNA1009807 2453 201 1.746914 3.51129714 Polychytrium aggregatum 110093 Fungi Fungi 50.4 2.01e-6   NR KAI9188549.1 110093 g2425 i0 50 0.686567164179104 46 23 68.7 0 182 45 1 46 KAI9188549.1 hypothetical protein BJ171DRAFT_549717 [Polychytrium aggregatum] diamond 138 50.4 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;