contig_metadata
14 rows where bioproject = "PRJNA1009807" and tax_phylum = "Chlamydiota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1001387 | 1001387 | PRJNA1009807_S_NODE_2101_length_214_cov_8.097143_g2073_i0 | PRJNA1009807 | 2101 | 214 | 8.097143 | 17.32788602 | Candidatus Protochlamydia | 282132 | Bacteria | Bacteria | 368 | 1.65e-97 | NTclustered | gi|1691252667|emb|BX908798.2| | 264201 | g2073 | i0 | 97.664 | 81.1588785046729 | 214 | 5 | 100 | 0 | 1 | 214 | 1250437 | 1250650 | Candidatus Protochlamydia amoebophila UWE25 complete genome | blastn | 17368 | 368 | 1 | Bacteria | PVC group | Pseudomonadati | Chlamydiota | Chlamydiia | Parachlamydiales | Parachlamydiaceae | Candidatus Protochlamydia | Candidatus Protochlamydia amoebophila | |
| 3551959 | 3551959 | PRJNA1009807_S_NODE_2403_length_203_cov_2.195122_g2375_i0 | PRJNA1009807 | 2403 | 203 | 2.195122 | 4.45609766 | Candidatus Protochlamydia | 282132 | Bacteria | Bacteria | 265 | 2.09e-66 | NTclustered | gi|1691252667|emb|BX908798.2| | 264201 | g2375 | i0 | 90.148 | 36.7142857142857 | 203 | 20 | 100 | 0 | 1 | 203 | 1250165 | 1249963 | Candidatus Protochlamydia amoebophila UWE25 complete genome | blastn | 7453 | 265 | 1 | Bacteria | PVC group | Pseudomonadati | Chlamydiota | Chlamydiia | Parachlamydiales | Parachlamydiaceae | Candidatus Protochlamydia | Candidatus Protochlamydia amoebophila | |
| 3551966 | 3551966 | PRJNA1009807_S_NODE_303_length_489_cov_6.688889_g276_i0 | PRJNA1009807 | 303 | 489 | 6.688889 | 32.70866721 | Candidatus Protochlamydia | 282132 | Bacteria | Bacteria | 532 | 1.3999999999999996e-146 | NTclustered | gi|971146634|emb|LN879502.1| | 389348 | g276 | i0 | 86.437 | 116.883435582822 | 494 | 57 | 100 | 9 | 1 | 489 | 1250927 | 1250439 | Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK | blastn | 57156 | 532 | 1 | Bacteria | PVC group | Pseudomonadati | Chlamydiota | Chlamydiia | Parachlamydiales | Parachlamydiaceae | Candidatus Protochlamydia | Candidatus Protochlamydia naegleriophila | |
| 3981222 | 3981222 | PRJNA1009807_S_NODE_1644_length_238_cov_9.502513_g1616_i0 | PRJNA1009807 | 1644 | 238 | 9.502513 | 22.61598094 | uncultured Parachlamydiaceae bacterium | 464461 | Bacteria | Bacteria | 348 | 2.4300000000000005e-91 | NTclustered | gi|2874253811|emb|OY969795.1| | 464461 | g1616 | i0 | 92.946 | 143.483193277311 | 241 | 13 | 100 | 4 | 1 | 238 | 2059360 | 2059599 | MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 | blastn | 34149 | 348 | 1 | Bacteria | PVC group | Pseudomonadati | Chlamydiota | Chlamydiia | Parachlamydiales | Parachlamydiaceae | uncultured Parachlamydiaceae bacterium | ||
| 7807366 | 7807366 | PRJNA1009807_S_NODE_3427_length_175_cov_9.830882_g3399_i0 | PRJNA1009807 | 3427 | 175 | 9.830882 | 17.2040435 | uncultured Parachlamydiaceae bacterium | 464461 | Bacteria | Bacteria | 219 | 1.37e-52 | NTclustered | gi|2874253811|emb|OY969795.1| | 464461 | g3399 | i0 | 89.205 | 93.0114285714286 | 176 | 17 | 100 | 2 | 1 | 175 | 655056 | 654882 | MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 | blastn | 16277 | 219 | 1 | Bacteria | PVC group | Pseudomonadati | Chlamydiota | Chlamydiia | Parachlamydiales | Parachlamydiaceae | uncultured Parachlamydiaceae bacterium | ||
| 7807387 | 7807387 | PRJNA1009807_S_NODE_607_length_370_cov_28.287009_g579_i0 | PRJNA1009807 | 607 | 370 | 28.287009 | 104.6619333 | Parachlamydiaceae bacterium | 2052176 | Bacteria | Bacteria | 549 | 1.0199999999999994e-151 | NTclustered | gi|1869331976|gb|CP058704.1| | 2052176 | g579 | i0 | 93.496 | 194.651351351351 | 369 | 24 | 99 | 0 | 2 | 370 | 836199 | 835831 | Parachlamydiaceae bacterium isolate SSA5 chromosome | blastn | 72021 | 549 | 1 | Bacteria | PVC group | Pseudomonadati | Chlamydiota | Chlamydiia | Parachlamydiales | Parachlamydiaceae | Parachlamydiaceae bacterium | ||
| 9082263 | 9082263 | PRJNA1009807_S_NODE_108_length_717_cov_7.874631_g56_i2 | PRJNA1009807 | 108 | 717 | 7.874631 | 56.46110427 | uncultured Parachlamydiaceae bacterium | 464461 | Bacteria | Bacteria | 968 | 0 | NTclustered | gi|2874253811|emb|OY969795.1| | 464461 | g56 | i2 | 91.123 | 183.850767085077 | 721 | 55 | 100 | 6 | 1 | 717 | 653694 | 654409 | MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 | blastn | 131821 | 968 | 1 | Bacteria | PVC group | Pseudomonadati | Chlamydiota | Chlamydiia | Parachlamydiales | Parachlamydiaceae | uncultured Parachlamydiaceae bacterium | ||
| 10357919 | 10357919 | PRJNA1009807_S_NODE_189_length_584_cov_29.860550_g168_i0 | PRJNA1009807 | 189 | 584 | 29.86055 | 174.385612 | uncultured Parachlamydiaceae bacterium | 464461 | Bacteria | Bacteria | 898 | 0 | NTclustered | gi|2874253811|emb|OY969795.1| | 464461 | g168 | i0 | 94.521 | 175.85102739726 | 584 | 28 | 100 | 3 | 1 | 584 | 654339 | 654918 | MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 | blastn | 102697 | 898 | 1 | Bacteria | PVC group | Pseudomonadati | Chlamydiota | Chlamydiia | Parachlamydiales | Parachlamydiaceae | uncultured Parachlamydiaceae bacterium | ||
| 13754824 | 13754824 | PRJNA1009807_S_NODE_71_length_864_cov_12.041212_g56_i0 | PRJNA1009807 | 71 | 864 | 12.041212 | 104.03607168 | Candidatus Protochlamydia | 282132 | Bacteria | Bacteria | 1086 | 0 | NTclustered | gi|971146634|emb|LN879502.1| | 389348 | g56 | i0 | 89.45 | 174.283564814815 | 872 | 77 | 100 | 13 | 1 | 864 | 1250063 | 1250927 | Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK | blastn | 150581 | 1096 | 0.990875912408759 | Bacteria | PVC group | Pseudomonadati | Chlamydiota | Chlamydiia | Parachlamydiales | Parachlamydiaceae | Candidatus Protochlamydia | Candidatus Protochlamydia naegleriophila | |
| 14183486 | 14183486 | PRJNA1009807_S_NODE_72_length_864_cov_7.277576_g56_i1 | PRJNA1009807 | 72 | 864 | 7.277576 | 62.87825664 | Candidatus Protochlamydia naegleriophila | 389348 | Bacteria | Bacteria | 1291 | 0 | NTclustered | gi|971146634|emb|LN879502.1| | 389348 | g56 | i1 | 93.671 | 148.887731481481 | 869 | 46 | 100 | 8 | 1 | 864 | 1250063 | 1250927 | Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK | blastn | 128639 | 1291 | 1 | Bacteria | PVC group | Pseudomonadati | Chlamydiota | Chlamydiia | Parachlamydiales | Parachlamydiaceae | Candidatus Protochlamydia | Candidatus Protochlamydia naegleriophila | |
| 18006576 | 18006576 | PRJNA1009807_S_NODE_535_length_397_cov_17.315642_g507_i0 | PRJNA1009807 | 535 | 397 | 17.315642 | 68.74309874 | uncultured Parachlamydiaceae bacterium | 464461 | Bacteria | Bacteria | 556 | 6.61e-154 | NTclustered | gi|2874253811|emb|OY969795.1| | 464461 | g507 | i0 | 94.247 | 164.073047858942 | 365 | 20 | 92 | 1 | 34 | 397 | 652444 | 652808 | MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 | blastn | 65137 | 556 | 1 | Bacteria | PVC group | Pseudomonadati | Chlamydiota | Chlamydiia | Parachlamydiales | Parachlamydiaceae | uncultured Parachlamydiaceae bacterium | ||
| 19280369 | 19280369 | PRJNA1009807_S_NODE_596_length_374_cov_15.056716_g568_i0 | PRJNA1009807 | 596 | 374 | 15.056716 | 56.31211784 | Candidatus Protochlamydia naegleriophila | 389348 | Bacteria | Bacteria | 516 | 1.05e-141 | NTclustered | gi|971146634|emb|LN879502.1| | 389348 | g568 | i0 | 91.689 | 231.909090909091 | 373 | 30 | 99 | 1 | 1 | 372 | 1249592 | 1249220 | Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK | blastn | 86734 | 516 | 1 | Bacteria | PVC group | Pseudomonadati | Chlamydiota | Chlamydiia | Parachlamydiales | Parachlamydiaceae | Candidatus Protochlamydia | Candidatus Protochlamydia naegleriophila | |
| 23107103 | 23107103 | PRJNA1009807_S_NODE_2419_length_202_cov_4.042945_g2391_i0 | PRJNA1009807 | 2419 | 202 | 4.042945 | 8.1667489 | Candidatus Protochlamydia naegleriophila | 389348 | Bacteria | Bacteria | 209 | 9.86e-50 | NTclustered | gi|971146634|emb|LN879502.1| | 389348 | g2391 | i0 | 85.644 | 181.50495049505 | 202 | 25 | 99 | 4 | 3 | 202 | 1249350 | 1249151 | Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK | blastn | 36664 | 209 | 1 | Bacteria | PVC group | Pseudomonadati | Chlamydiota | Chlamydiia | Parachlamydiales | Parachlamydiaceae | Candidatus Protochlamydia | Candidatus Protochlamydia naegleriophila | |
| 23107126 | 23107126 | PRJNA1009807_S_NODE_4639_length_155_cov_8.620690_g4611_i0 | PRJNA1009807 | 4639 | 155 | 8.62069 | 13.3620695 | Neochlamydia hartmannellae | 112235 | Bacteria | Bacteria | 145 | 2.04e-30 | NTclustered | gi|194594624|gb|EU662269.1| | 112235 | g4611 | i0 | 84.932 | 202.703225806452 | 146 | 19 | 94 | 2 | 11 | 155 | 493 | 636 | Neochlamydia hartmannellae strain ATCC 50802 23S ribosomal RNA gene, partial sequence | blastn | 31419 | 145 | 1 | Bacteria | PVC group | Pseudomonadati | Chlamydiota | Chlamydiia | Parachlamydiales | Parachlamydiaceae | Neochlamydia | Neochlamydia hartmannellae |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;