RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1009807", tax_phylum = "Bdellovibrionota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 6 ✖

tax_phylum 1

  • Bdellovibrionota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1009807 · 6 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5257705 5257705 PRJNA1009807_S_NODE_1705_length_234_cov_18.589744_g1677_i0 PRJNA1009807 1705 234 18.589744 43.50000096 Bdellovibrio bacteriovorus 959 Bacteria Bacteria 296 8.77e-76   NTclustered gi|2800948966|gb|CP168973.1| 959 g1677 i0 89.744 135.465811965812 234 20 99 4 2 233 815494 815725 Bdellovibrio bacteriovorus strain HK2 chromosome, complete genome blastn 31699 296 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
6532977 6532977 PRJNA1009807_S_NODE_186_length_587_cov_12.062044_g165_i0 PRJNA1009807 186 587 12.062044 70.80419828 Bdellovibrio sp. HCB337 3394358 Bacteria Bacteria 798 0   NTclustered gi|2895525383|gb|CP178621.1| 3394358 g165 i0 91.092 105.829642248722 595 45 100 5 1 587 3447393 3446799 Bdellovibrio sp. HCB337 chromosome, complete genome blastn 62122 798 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB337
8654527 8654527 PRJNA1009807_S_NODE_187_length_585_cov_9.335165_g166_i0 PRJNA1009807 187 585 9.335165 54.61071525 Pseudobdellovibrio 2862745 Bacteria Bacteria 880 0   NTclustered gi|507148233|ref|NR_103040.1| 453816 g166 i0 93.718 92.5504273504274 589 33 100 4 1 585 1733 1145 Bdellovibrio exovorus strain JSS 23S ribosomal RNA gene, complete sequence blastn 54142 880 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio exovorus
12480244 12480244 PRJNA1009807_S_NODE_630_length_367_cov_5.914634_g602_i0 PRJNA1009807 630 367 5.914634 21.70670678 Pseudobdellovibrio 2862745 Bacteria Bacteria 446 1.3699999999999999e-120   NTclustered gi|507148233|ref|NR_103040.1| 453816 g602 i0 88.649 349.261580381471 370 37 100 5 1 367 500 133 Bdellovibrio exovorus strain JSS 23S ribosomal RNA gene, complete sequence blastn 128179 446 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio exovorus
20555968 20555968 PRJNA1009807_S_NODE_137_length_636_cov_19.266332_g118_i0 PRJNA1009807 137 636 19.266332 122.53387152 Bdellovibrio bacteriovorus 959 Bacteria Bacteria 979 0   NTclustered gi|2800948966|gb|CP168973.1| 959 g118 i0 94.762 202.504716981132 630 32 99 1 8 636 1677583 1676954 Bdellovibrio bacteriovorus strain HK2 chromosome, complete genome blastn 128793 979 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
23953719 23953719 PRJNA1009807_S_NODE_1079_length_292_cov_4.272727_g1051_i0 PRJNA1009807 1079 292 4.272727 12.47636284 Pseudobdellovibrio 2862745 Bacteria Bacteria 324 5.19e-84   NTclustered gi|507148233|ref|NR_103040.1| 453816 g1051 i0 86.986 65.0068493150685 292 33 99 3 1 289 500 211 Bdellovibrio exovorus strain JSS 23S ribosomal RNA gene, complete sequence blastn 18982 324 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio exovorus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;