RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1009807" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1009807 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7807369 7807369 PRJNA1009807_S_NODE_367_length_459_cov_7.559524_g339_i0 PRJNA1009807 367 459 7.559524 34.69821516 Plasmodium chabaudi 5825 SAR_Eukaryotes SAR_Eukaryotes 91.6 9.44e-14   NTclustered gi|1027949921|ref|XR_001678647.1| 31271 g339 i0 77.64 0.886710239651416 161 28 34 6 12 169 1310 1465 Plasmodium chabaudi chabaudi 28S ribosomal RNA (PCHAS_0521461), rRNA blastn 407 91.6 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium chabaudi
19280350 19280350 PRJNA1009807_S_NODE_2536_length_198_cov_10.188679_g2508_i0 PRJNA1009807 2536 198 10.188679 20.17358442 uncultured Eimeriidae 404735 SAR_Eukaryotes SAR_Eukaryotes 320 4.26e-83   NTclustered gi|134021988|gb|EF023338.1| 404735 g2508 i0 95.939 99.3888888888889 197 8 99 0 1 197 1466 1662 Eimeriidae environmental sample clone Amb_18S_660 18S ribosomal RNA gene, partial sequence blastn 19679 320 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae   uncultured Eimeriidae
21403483 21403483 PRJNA1009807_S_NODE_3097_length_183_cov_1.666667_g3069_i0 PRJNA1009807 3097 183 1.666667 3.05000061 Babesia 5864 SAR_Eukaryotes SAR_Eukaryotes 102 1.53e-17   NTclustered gi|2407592322|gb|CP113819.1| 5868 g3069 i0 85.567 7.98360655737705 97 14 53 0 41 137 4730 4634 Babesia microti isolate human/USA/NY-MGB-JLBM1D1 apicoplast blastn 1461 102 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia microti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;