RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1009807", tax_kingdom = "Pseudomonadati" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 4 ✖

tax_kingdom 1

  • Pseudomonadati · 4 ✖

bioproject 1

  • PRJNA1009807 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6104585 6104585 PRJNA1009807_S_NODE_4585_length_156_cov_2.111111_g4557_i0 PRJNA1009807 4585 156 2.111111 3.29333316 Myxococcus 32 Bacteria Bacteria 259 7.05e-65   NTclustered gi|2318731907|gb|CP104804.1| 34 g4557 i0 96.774 191.076923076923 155 5 99 0 1 155 379294 379448 Myxococcus xanthus strain DK1050 chromosome blastn 29808 259 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus xanthus
14183487 14183487 PRJNA1009807_S_NODE_832_length_325_cov_6.506993_g804_i0 PRJNA1009807 832 325 6.506993 21.14772725 Pendulispora albinea 2741071 Bacteria Bacteria 182 3.73e-41   NTclustered gi|2698035964|gb|CP089984.1| 2741071 g804 i0 77.246 13.2523076923077 334 61 100 12 1 325 3589137 3589464 Pendulispora albinea strain MSr11954 chromosome, complete genome blastn 4307 182 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora albinea
15029149 15029149 PRJNA1009807_S_NODE_12_length_1481_cov_26.274619_g10_i0 PRJNA1009807 12 1481 26.274619 389.12710739 Myxococcia 32015 Bacteria Bacteria 1698 0   NTclustered gi|913610804|gb|CP012333.1| 1391654 g10 i0 87.408 150.752194463201 1501 160 99 25 2 1481 3943495 3942003 Labilithrix luteola strain DSM 27648, complete genome blastn 223264 1698 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
19280336 19280336 PRJNA1009807_S_NODE_1616_length_240_cov_3.736318_g1588_i0 PRJNA1009807 1616 240 3.736318 8.9671632 Minicystis rosea 888845 Bacteria Bacteria 191 4.38e-44   NTclustered gi|1127353251|gb|CP016211.1| 888845 g1588 i0 82.727 90.4833333333333 220 33 90 5 17 233 769195 769412 Minicystis rosea strain DSM 24000 chromosome, complete genome blastn 21716 191 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Minicystis Minicystis rosea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;