RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1009807", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

  • Metazoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1009807 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5257712 5257712 PRJNA1009807_S_NODE_2205_length_210_cov_26.637427_g2177_i0 PRJNA1009807 2205 210 26.637427 55.9385967 Myolaimus byersi 1811516 Nematoda Nematoda 209 1.03e-49   NTclustered gi|1003466868|gb|KU180676.1| 1811516 g2177 i0 85.507 99.5333333333333 207 23 98 7 6 210 1047 1248 Myolaimus byersi 28S ribosomal RNA gene, partial sequence blastn 20902 209 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Myolaimidae Myolaimus Myolaimus byersi
26907941 26907941 PRJNA1009807_S_NODE_122_length_663_cov_3.791667_g105_i0 PRJNA1009807 122 663 3.791667 25.13875221 Trichuris suis 68888 Nematoda Nematoda 52.4 6.44e-4   NR KFD59988.1 68888 g105 i0 41.3 0.470588235294118 104 51 43 3 466 182 207 309 KFD59988.1 LOW QUALITY PROTEIN: hypothetical protein M514_27836 [Trichuris suis] diamond 312 52.4 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;