RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1009807", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 2 ✖

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJNA1009807 · 2 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6104548 6104548 PRJNA1009807_S_NODE_1485_length_248_cov_74.382775_g1457_i0 PRJNA1009807 1485 248 74.382775 184.469282 Bacteria 2 Bacteria Bacteria 403 5.38e-108   NTclustered gi|1206270919|emb|LT842801.1| 34034 g1457 i0 96.327 95.7620967741936 245 9 99 0 1 245 141 385 Uncultured delta proteobacterium partial 16S rRNA gene, isolate BACT_OTU_2578 blastn 23749 403 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
9082300 9082300 PRJNA1009807_S_NODE_4028_length_164_cov_8.528000_g4000_i0 PRJNA1009807 4028 164 8.528 13.98592 uncultured delta proteobacterium 34034 Bacteria Bacteria 204 3.5699999999999997e-48   NTclustered gi|374854163|dbj|AP011765.1| 34034 g4000 i0 90.446 136.335365853659 157 12 95 2 3 157 13900 13745 Uncultured delta proteobacterium DNA, fosmid clone: JFF046_H12 blastn 22359 204 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;