RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA1009807", tax_clade = "Opisthokonta" and tax_phylum = "Chordata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chordata · 2 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 2 ✖

bioproject 1

  • PRJNA1009807 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3981241 3981241 PRJNA1009807_S_NODE_3484_length_174_cov_3.600000_g3456_i0 PRJNA1009807 3484 174 3.6 6.264 Polypterus senegalus 55291 Chordata Chordata 195 2.3e-45   NTclustered gi|1993937637|ref|XM_039741126.1| 55291 g3456 i0 90.132 9.79885057471264 152 12 86 3 1 150 1323 1173 PREDICTED: Polypterus senegalus E3 SUMO-protein ligase ZBED1-like (LOC120518358), transcript variant X2, mRNA blastn 1705 195 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
15457419 15457419 PRJNA1009807_S_NODE_4593_length_156_cov_1.803419_g4565_i0 PRJNA1009807 4593 156 1.803419 2.81333364 Erpetoichthys calabaricus 27687 Chordata Chordata 189 9.39e-44   NTclustered gi|2327563545|ref|XM_051935314.1| 27687 g4565 i0 91.304 16.4551282051282 138 12 88 0 1 138 845 982 PREDICTED: Erpetoichthys calabaricus E3 SUMO-protein ligase ZBED1-like (LOC127529930), mRNA blastn 2567 189 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;