RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA1009807", tax_clade = "FCB group" and tax_phylum = "Chlorobiota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA1009807 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5257698 5257698 PRJNA1009807_S_NODE_1345_length_260_cov_9.547511_g1317_i0 PRJNA1009807 1345 260 9.547511 24.8235286 uncultured Chlorobiota bacterium 156405 Bacteria Bacteria 481 2.55e-131   NTclustered gi|77403655|dbj|AB161089.1| 156405 g1317 i0 100 112.015384615385 260 0 100 0 1 260 93 352 Uncultured Chlorobi bacterium gene for 16S ribosomal RNA, partial sequence, clone:3D9 blastn 29124 481 1 Bacteria FCB group Pseudomonadati Chlorobiota         uncultured Chlorobiota bacterium
27855755 27855755 PRJNA1009807_S_NODE_2265_length_208_cov_4.733728_g2237_i0 PRJNA1009807 2265 208 4.733728 9.84615424 Chlorobiaceae bacterium 2067991 Bacteria Bacteria 61.2 7.12e-9   NR NMW17687.1 2067991 g2237 i0 49.3 0.995192307692308 69 31 99.5 1 207 1 257 321 NMW17687.1 DUF4214 domain-containing protein [Chlorobiaceae bacterium] diamond 207 61.2 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae   Chlorobiaceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;