RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1009807" and tax_clade = "Embryophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Embryophyta · 6 ✖

bioproject 1

  • PRJNA1009807 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1001396 1001396 PRJNA1009807_S_NODE_281_length_497_cov_20.032751_g254_i0 PRJNA1009807 281 497 20.032751 99.56277247 Selaginella 3246 Plants Plants 137 1.3e-27   NTclustered gi|2484062546|gb|OQ799636.1| 189553 g254 i0 76.753 25.6378269617706 271 48 53 12 3 266 4408 4146 Selaginella dregei voucher B Liu 62298 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 12742 137 1 Eukaryota Embryophyta Viridiplantae Streptophyta Lycopodiopsida Selaginellales Selaginellaceae Selaginella Selaginella dregei
11633411 11633411 PRJNA1009807_S_NODE_3190_length_181_cov_1.140845_g3162_i0 PRJNA1009807 3190 181 1.140845 2.06492945 Cucumis melo 3656 Plants Plants 54.7 0.004   NTclustered gi|733578316|emb|LN713263.1| 3656 g3162 i0 96.97 0.364640883977901 33 0 18 1 111 143 23720629 23720598 Cucumis melo genomic chromosome, chr_9 blastn 66 54.7 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Cucurbitales Cucurbitaceae Cucumis Cucumis melo
12908502 12908502 PRJNA1009807_S_NODE_4531_length_157_cov_1.330508_g4503_i0 PRJNA1009807 4531 157 1.330508 2.08889756 Sinapis alba 3728 Plants Plants 285 1.17e-72   NTclustered gi|21157|emb|X66325.1| 3728 g4503 i0 99.363 19.7707006369427 157 1 100 0 1 157 6675 6831 S.alba 18S, 5.8S & 25S rRNA genes blastn 3104 285 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Sinapis Sinapis alba
16731683 16731683 PRJNA1009807_S_NODE_1074_length_293_cov_1.897638_g1046_i0 PRJNA1009807 1074 293 1.897638 5.56007934 Camellia sinensis 4442 Plants Plants 73.1 2.09e-8   NTclustered gi|1585687555|ref|XR_003647768.1| 4442 g1046 i0 78.899 0.573378839590444 109 22 37 1 134 242 1850 1957 PREDICTED: Camellia sinensis 28S ribosomal RNA (LOC114315374), rRNA blastn 168 73.1 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Ericales Theaceae Camellia Camellia sinensis
28487391 28487391 PRJNA1009807_S_NODE_1867_length_226_cov_7.636364_g1839_i0 PRJNA1009807 1867 226 7.636364 17.25818264 Cichorium endivia 114280 Plants Plants 45.8 0.00249   NR KAI3490028.1 114280 g1839 i0 57.1 1.02212389380531 42 18 55.8 0 219 94 303 344 KAI3490028.1 hypothetical protein L1887_45857 [Cichorium endivia] diamond 231 45.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Asterales Asteraceae Cichorium Cichorium endivia
30761315 30761315 PRJNA1009807_S_NODE_4454_length_158_cov_1.899160_g4426_i0 PRJNA1009807 4454 158 1.89916 3.0006728 Tanacetum cinerariifolium 118510 Plants Plants 45.8 9.68e-4   NR GEU28441.1 118510 g4426 i0 48 0.949367088607595 50 26 94.9 0 9 158 2848 2897 GEU28441.1 hypothetical protein [Tanacetum cinerariifolium] diamond 150 45.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Asterales Asteraceae Tanacetum Tanacetum cinerariifolium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;