RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1009807" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 3 ✖

bioproject 1

  • PRJNA1009807 · 3 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3981261 3981261 PRJNA1009807_S_NODE_644_length_363_cov_10.416667_g616_i0 PRJNA1009807 644 363 10.416667 37.81250121 Catacumbia lutetiensis 2925415 Root_unresolved Root_unresolved 148 4.27e-31   NTclustered gi|2206682166|gb|OM966639.1| 2925415 g616 i0 88 32.6969696969697 125 15 34 0 48 172 5302 5178 Catacumbia lutetiensis strain ORSAYFEB19APU2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 11869 148 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Catacumbia Catacumbia lutetiensis
6533015 6533015 PRJNA1009807_S_NODE_826_length_326_cov_12.787456_g798_i0 PRJNA1009807 826 326 12.787456 41.68710656 Catacumbia lutetiensis 2925415 Root_unresolved Root_unresolved 154 8.170000000000001e-33   NTclustered gi|2206682166|gb|OM966639.1| 2925415 g798 i0 88.8 34.1840490797546 125 14 38 0 155 279 5178 5302 Catacumbia lutetiensis strain ORSAYFEB19APU2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 11144 154 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Catacumbia Catacumbia lutetiensis
16731691 16731691 PRJNA1009807_S_NODE_1594_length_241_cov_25.767327_g1566_i0 PRJNA1009807 1594 241 25.767327 62.09925807 Cavaliersmithia chaoae 3003318 Root_unresolved Root_unresolved 97.1 9.88e-16   NTclustered gi|2206682172|gb|OM966645.1| 3003318 g1566 i0 98.182 22.0871369294606 55 1 23 0 3 57 6554 6608 Cavaliersmithia chaoae strain FABANU small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 5323 97.1 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Cavaliersmithia Cavaliersmithia chaoae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;