RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1009807", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 4 ✖

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA1009807 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7807375 7807375 PRJNA1009807_S_NODE_4547_length_156_cov_35.051282_g4519_i0 PRJNA1009807 4547 156 35.051282 54.67999992 Copromyxa sp. PKD 2011 1215977 Tubulinea other_Eukaryota 281 1.51e-71   NTclustered gi|399764167|gb|JQ271678.1| 1215977 g4519 i0 99.355 99.6410256410256 155 1 99 0 1 155 979 1133 Copromyxa sp. PKD 2011 strain ZEB1 18S ribosomal RNA gene, partial sequence blastn 15544 281 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa sp. PKD 2011
15457426 15457426 PRJNA1009807_S_NODE_673_length_356_cov_28.154574_g645_i0 PRJNA1009807 673 356 28.154574 100.23028344 Copromyxa sp. PKD 2011 1215977 Tubulinea other_Eukaryota 645 1.2199999999999996e-180   NTclustered gi|399764167|gb|JQ271678.1| 1215977 g645 i0 100 66.247191011236 349 0 98 0 2 350 986 638 Copromyxa sp. PKD 2011 strain ZEB1 18S ribosomal RNA gene, partial sequence blastn 23584 645 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa sp. PKD 2011
18006580 18006580 PRJNA1009807_S_NODE_875_length_319_cov_41.560714_g847_i0 PRJNA1009807 875 319 41.560714 132.57867766 Copromyxa sp. PKD 2011 1215977 Tubulinea other_Eukaryota 590 5.1299999999999986e-164   NTclustered gi|399764168|gb|JQ271679.1| 1215977 g847 i0 100 80.1222570532915 319 0 100 0 1 319 89 407 Copromyxa sp. PKD 2011 strain ZEB4 18S ribosomal RNA gene, partial sequence blastn 25559 590 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa sp. PKD 2011
23107129 23107129 PRJNA1009807_S_NODE_539_length_396_cov_28.689076_g511_i0 PRJNA1009807 539 396 28.689076 113.60874096 Copromyxa sp. PKD 2011 1215977 Tubulinea other_Eukaryota 717 0   NTclustered gi|399764167|gb|JQ271678.1| 1215977 g511 i0 100 32.1388888888889 388 0 98 0 9 396 1709 1322 Copromyxa sp. PKD 2011 strain ZEB1 18S ribosomal RNA gene, partial sequence blastn 12727 717 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa sp. PKD 2011

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;