RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1008624" and tax_phylum = "Fibrobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1008624 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31646194 31646194 PRJNA1008624_P_NODE_31637_length_166_cov_0.888889_g31449_i0 PRJNA1008624 31637 166 0.888889 1.47555574 Fibrobacter sp. 35828 Bacteria Bacteria 54.7 4.96e-8   NR MDY6285443.1 35828 g31449 i0 68.2 1.5 44 14 79.5 0 11 142 28 71 MDY6285443.1 prepilin-type N-terminal cleavage/methylation domain-containing protein [Fibrobacter sp.] diamond 249 54.7 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp.
32878679 32878679 PRJNA1008624_P_NODE_28960_length_168_cov_0.873950_g28772_i0 PRJNA1008624 28960 168 0.87395 1.468236 Fibrobacteria bacterium 2725311 Bacteria Bacteria 59.7 2.02e-9   NR MEO7778521.1 2725311 g28772 i0 56.6 0.946428571428571 53 22 94.6 1 164 6 62 113 MEO7778521.1 hypothetical protein [Fibrobacteria bacterium] diamond 159 59.7 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria       Fibrobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;