RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1008624" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1008624 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29616162 29616162 PRJNA1008624_P_NODE_18230_length_200_cov_1.013245_g18042_i0 PRJNA1008624 18230 200 1.013245 2.02649 Metazoa 33208 Echinodermata other_Eukaryota 42 0.0381   NR XP_041474807.1 7654 g18042 i0 41.7 4.32 48 28 72 0 4 147 132 179 XP_041474807.1 uncharacterized protein LOC121423521 [Lytechinus variegatus] diamond 864 42.4 0.990566037735849 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus
30508474 30508474 PRJNA1008624_P_NODE_1173_length_799_cov_2.350667_g1035_i0 PRJNA1008624 1173 799 2.350667 18.78182933 Lytechinus pictus 7653 Echinodermata other_Eukaryota 52 0.00136   NR XP_063968654.1 7653 g1035 i0 41.7 0.180225281602002 48 27 17.6 1 795 655 6 53 XP_063968654.1 uncharacterized protein LOC135157353 [Lytechinus pictus] diamond 144 52 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus pictus
31171686 31171686 PRJNA1008624_P_NODE_28975_length_168_cov_0.873950_g28787_i0 PRJNA1008624 28975 168 0.87395 1.468236 Strongylocentrotus purpuratus 7668 Echinodermata other_Eukaryota 42 0.0252   NR XP_030844668.1 7668 g28787 i0 42.5 0.714285714285714 40 23 71.4 0 145 26 350 389 XP_030844668.1 uncharacterized protein LOC115925216 [Strongylocentrotus purpuratus] diamond 120 42 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;