RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1008624", tax_kingdom = "Viridiplantae" and tax_phylum = "Chlorophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 2 ✖

tax_kingdom 1

  • Viridiplantae · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1008624 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15456654 15456654 PRJNA1008624_P_NODE_16433_length_209_cov_2.100000_g16245_i0 PRJNA1008624 16433 209 2.1 4.389 Bathycoccus prasinos 41875 Plants Plants 86.1 1.81e-12   NTclustered gi|290770787|emb|FN563099.1| 41875 g16245 i0 89.706 33.1578947368421 68 5 32 2 58 123 2256 2189 Bathycoccus prasinos plastid 16S rRNA gene (partial), ITS1, tRNA-Ile gene, tRNA-Ala gene and 23S rRNA gene (partial), strain SCCAP K-0417 blastn 6930 86.1 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Bathycoccaceae Bathycoccus Bathycoccus prasinos
28013873 28013873 PRJNA1008624_P_NODE_5025_length_378_cov_4.355623_g4838_i0 PRJNA1008624 5025 378 4.355623 16.46425494 Chlorella ohadii 2649997 Plants Plants 50.8 2.56e-4   NR KAI7838795.1 2649997 g4838 i0 35.4 1.11904761904762 82 44 57.9 2 33 251 108 189 KAI7838795.1 hypothetical protein COHA_007410 [Chlorella ohadii] diamond 423 50.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella ohadii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;