RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1008624", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

  • Metazoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1008624 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12908047 12908047 PRJNA1008624_P_NODE_27931_length_169_cov_0.866667_g27743_i0 PRJNA1008624 27931 169 0.866667 1.46466723 Caenorhabditis briggsae 6238 Nematoda Nematoda 52.8 0.014   NTclustered gi|268569797|ref|XM_002648295.1| 6238 g27743 i0 100 0.165680473372781 28 0 17 0 136 163 132 105 Caenorhabditis briggsae Protein CBG24532 (CBG24532), partial mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
14183426 14183426 PRJNA1008624_P_NODE_9752_length_267_cov_6.013761_g9564_i0 PRJNA1008624 9752 267 6.013761 16.05674187 Ecumenicus monohystera 211289 Nematoda Nematoda 427 3.47e-115   NTclustered gi|51093905|gb|AY593013.1| 211289 g9564 i0 95.833 97.2659176029963 264 11 99 0 1 264 346 83 Ecumenicus monohystera clone EcumMon large subunit ribosomal RNA gene, partial sequence blastn 25970 427 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dorylaimida Qudsianematidae Ecumenicus Ecumenicus monohystera

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;