RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1008624", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA1008624 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6532123 6532123 PRJNA1008624_P_NODE_13866_length_225_cov_3.198864_g13678_i0 PRJNA1008624 13866 225 3.198864 7.197444 uncultured Mycoplasmatota bacterium 658143 Bacteria Bacteria 89.8 1.52e-13   NTclustered gi|2187152065|emb|OV788643.1| 658143 g13678 i0 94.737 137.764444444444 57 3 25 0 129 185 931422 931478 uncultured Tenericutes bacterium isolate min17_bin32 genome assembly, chromosome: 1 blastn 30997 89.8 1 Bacteria   Bacillati Mycoplasmatota         uncultured Mycoplasmatota bacterium
29339895 29339895 PRJNA1008624_P_NODE_24589_length_176_cov_1.866142_g24401_i0 PRJNA1008624 24589 176 1.866142 3.28440992 Mycoplasmatales bacterium 2023991 Bacteria Bacteria 50.1 3.93e-5   NR HXN54441.1 2023991 g24401 i0 39.2 1.75568181818182 51 31 86.9 0 167 15 395 445 HXN54441.1 reverse transcriptase family protein [Mycoplasmatales bacterium] diamond 309 50.1 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales     Mycoplasmatales bacterium
30223994 30223994 PRJNA1008624_P_NODE_34892_length_163_cov_0.912281_g34704_i0 PRJNA1008624 34892 163 0.912281 1.48701803 Mycoplasmopsis arginini 2094 Bacteria Bacteria 52 6.55e-6   NR WP_282460165.1 2094 g34704 i0 48.8 0.754601226993865 41 21 75.5 0 130 8 187 227 WP_282460165.1 hypothetical protein, partial [Mycoplasmopsis arginini] diamond 123 52 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis arginini

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;