RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1008624", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 4 ✖

bioproject 1

  • PRJNA1008624 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28518979 28518979 PRJNA1008624_P_NODE_6387_length_333_cov_2.084507_g6199_i0 PRJNA1008624 6387 333 2.084507 6.94140831 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 145 5.78e-39   NR MDR0788511.1 2026742 g6199 i0 70.4 0.972972972972973 108 32 97.3 0 3 326 172 279 MDR0788511.1 cation-efflux pump [Gemmatimonadota bacterium] diamond 324 145 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
28708457 28708457 PRJNA1008624_P_NODE_21187_length_188_cov_1.100719_g20999_i0 PRJNA1008624 21187 188 1.100719 2.06935172 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 102 1.1399999999999999e-23   NR MDR0788511.1 2026742 g20999 i0 86.4 0.941489361702128 59 8 94.1 0 186 10 172 230 MDR0788511.1 cation-efflux pump [Gemmatimonadota bacterium] diamond 177 102 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
30634655 30634655 PRJNA1008624_P_NODE_27233_length_169_cov_0.866667_g27045_i0 PRJNA1008624 27233 169 0.866667 1.46466723 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 58.9 1.55e-8   NR MFC1613918.1 2026742 g27045 i0 48.1 3.7810650887574 54 28 95.9 0 165 4 110 163 MFC1613918.1 recombinase family protein [Gemmatimonadota bacterium] diamond 639 58.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
32878680 32878680 PRJNA1008624_P_NODE_34440_length_164_cov_0.904348_g34252_i0 PRJNA1008624 34440 164 0.904348 1.48313072 Gemmatimonas sp. 1962908 Bacteria Bacteria 41.2 0.0453   NR WP_298269260.1 1962908 g34252 i0 51.5 0.603658536585366 33 16 60.4 0 1 99 110 142 WP_298269260.1 gamma-glutamyltransferase family protein [Gemmatimonas sp.] diamond 99 41.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;