RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1008624" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJNA1008624 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13754742 13754742 PRJNA1008624_P_NODE_29171_length_168_cov_0.773109_g28983_i0 PRJNA1008624 29171 168 0.773109 1.29882312 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 278 2.14e-70   NTclustered gi|197723519|gb|EF681898.2| 75058 g28983 i0 98.113 96.2083333333333 159 3 95 0 7 165 255 97 Bodo saltans strain HFCC13 28S ribosomal RNA gene, partial sequence blastn 16163 278 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans
16731008 16731008 PRJNA1008624_P_NODE_19214_length_195_cov_1.157534_g19026_i0 PRJNA1008624 19214 195 1.157534 2.2571913 Peranema trichophorum 56466 Euglenozoa other_Eukaryota 246 7.2e-61   NTclustered gi|27461806|gb|AY130826.1| 56466 g19026 i0 98.561 1.12307692307692 139 2 71 0 57 195 1 139 Peranema trichophorum voucher Carolina Biol. Supp. Co. (CBS) CE 13-1838 large subunit ribosomal RNA gene, partial sequence blastn 219 246 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemidae Peranema Peranema trichophorum
23106998 23106998 PRJNA1008624_P_NODE_7739_length_300_cov_3.382470_g7551_i0 PRJNA1008624 7739 300 3.38247 10.14741 Peranema trichophorum 56466 Euglenozoa other_Eukaryota 527 3.799999999999999e-145   NTclustered gi|27461806|gb|AY130826.1| 56466 g7551 i0 98.653 2.66333333333333 297 4 99 0 4 300 108 404 Peranema trichophorum voucher Carolina Biol. Supp. Co. (CBS) CE 13-1838 large subunit ribosomal RNA gene, partial sequence blastn 799 527 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemidae Peranema Peranema trichophorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;