RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA1008624", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Aminicenantota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Aminicenantota · 2 ✖

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA1008624 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30090092 30090092 PRJNA1008624_P_NODE_36312_length_162_cov_0.920354_g36124_i0 PRJNA1008624 36312 162 0.920354 1.49097348 Pseudomonadati 3379134 Bacteria Bacteria 96.3 3.91e-22   NR HNT33145.1 2052149 g36124 i0 78.8 7.7037037037037 52 11 96.3 0 157 2 45 96 HNT33145.1 DNA methyltransferase [Candidatus Aminicenantes bacterium] diamond 1248 96.7 0.995863495346432 Bacteria Bacteria candidate phyla   Candidatus Aminicenantota         Candidatus Aminicenantes bacterium
32057567 32057567 PRJNA1008624_P_NODE_23658_length_179_cov_1.769231_g23470_i0 PRJNA1008624 23658 179 1.769231 3.16692349 Candidatus Aminicenantes bacterium 2052149 Bacteria Bacteria 54.7 1.5e-7   NR HDZ27302.1 2052149 g23470 i0 46.9 2.69832402234637 49 26 82.1 0 17 163 30 78 HDZ27302.1 DUF559 domain-containing protein [Candidatus Aminicenantes bacterium] diamond 483 54.7 1 Bacteria Bacteria candidate phyla   Candidatus Aminicenantota         Candidatus Aminicenantes bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;