RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1008624", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Altimarinota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Altimarinota · 2 ✖

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA1008624 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28676844 28676844 PRJNA1008624_P_NODE_35607_length_163_cov_0.912281_g35419_i0 PRJNA1008624 35607 163 0.912281 1.48701803 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 92.8 2.79e-20   NR MCF7843386.1 2044595 g35419 i0 79.6 0.901840490797546 49 10 90.2 0 15 161 560 608 MCF7843386.1 glycoside hydrolase family 15 protein [Candidatus Altimarinota bacterium] diamond 147 92.8 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
31235033 31235033 PRJNA1008624_P_NODE_29055_length_168_cov_0.873950_g28867_i0 PRJNA1008624 29055 168 0.87395 1.468236 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 48.9 9.23e-5   NR MFK7779772.1 2044595 g28867 i0 59.4 0.571428571428571 32 13 57.1 0 1 96 252 283 MFK7779772.1 recombinase family protein [Candidatus Altimarinota bacterium] diamond 96 48.9 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;