RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA1008624", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 1 ✖

tax_clade 1

  • Amoebozoa · 1 ✖

bioproject 1

  • PRJNA1008624 · 1 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1429206 1429206 PRJNA1008624_P_NODE_31282_length_166_cov_0.888889_g31094_i0 PRJNA1008624 31282 166 0.888889 1.47555574 Ripella sp. 805 1217113 Discosea other_Eukaryota 270 3.5299999999999998e-68   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g31094 i0 96.386 80 166 3 99 3 2 165 830 666 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 13280 270 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;