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contig_metadata

19 rows where bioproject = "PRJNA1005695" and tax_superkingdom = "Archaea"

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analysis 2

tax_superkingdom 1

  • Archaea · 19 ✖

bioproject 1

  • PRJNA1005695 · 19 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3979978 3979978 PRJNA1005695_P_NODE_32724_length_260_cov_3.000000_g31872_i0 PRJNA1005695 32724 260 3 7.8 Candidatus Bathyarchaeota archaeon 2026714 Archaea Archaea 77.4 4.04e-15   NR MBD3188985.1 2026714 g31872 i0 55.4 0.75 65 29 75 0 65 259 3 67 MBD3188985.1 hypothetical protein [Candidatus Bathyarchaeota archaeon] diamond 195 77.4 1 Archaea   Thermoproteati Candidatus Bathyarchaeota         Candidatus Bathyarchaeota archaeon
11632117 11632117 PRJNA1005695_P_NODE_30370_length_271_cov_1.414141_g29518_i0 PRJNA1005695 30370 271 1.414141 3.83232211 haloarchaeon 3A1-DGR 1071085 Archaea Archaea 56.5 0.002   NTclustered gi|1804090075|gb|CP048032.1| 1071085 g29518 i0 100 0.431734317343173 30 0 11 0 210 239 1418784 1418813 Haloarchaeon 3A1-DGR strain 3A1-DGR chromosome, complete genome blastn 117 56.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales     haloarchaeon 3A1-DGR
16730445 16730445 PRJNA1005695_P_NODE_29934_length_273_cov_1.100000_g29082_i0 PRJNA1005695 29934 273 1.1 3.003 uncultured crenarchaeote 29281 Archaea Archaea 424 4.61e-114   NTclustered gi|42557759|emb|AJ627422.1| 29281 g29082 i0 95.817 73.1648351648352 263 10 96 1 11 273 40645 40384 Uncultured crenarchaeote genomic fragment 54d9 blastn 19974 424 1 Archaea   Thermoproteati Thermoproteota         uncultured crenarchaeote
26781400 26781400 PRJNA1005695_P_NODE_17621_length_360_cov_1.630662_g16769_i0 PRJNA1005695 17621 360 1.630662 5.8703832 Methanobrevibacter sp. 66852 Archaea Archaea 67 4.35e-10   NR MBO7713100.1 66852 g16769 i0 37.1 2.04166666666667 132 66 96.7 4 12 359 1 131 MBO7713100.1 hypothetical protein [Methanobrevibacter sp.] diamond 735 67 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
27887255 27887255 PRJNA1005695_P_NODE_35705_length_251_cov_0.876404_g34853_i0 PRJNA1005695 35705 251 0.876404 2.19977404 archaeon 1906665 Archaea Archaea 140 4.439999999999999e-37   NR MDP2438047.1 1906665 g34853 i0 79 0.968127490039841 81 17 96.8 0 1 243 133 213 MDP2438047.1 Tudor-knot domain-containing protein [archaeon] diamond 243 140 1 Archaea               archaeon
28132625 28132625 PRJNA1005695_P_NODE_39505_length_243_cov_0.917647_g38653_i0 PRJNA1005695 39505 243 0.917647 2.22988221 Methanobacteriota 28890 Archaea Archaea 44.3 0.00236   NR WP_048148373.1 230356 g38653 i0 47.1 2.69135802469136 51 27 63 0 63 215 4 54 WP_048148373.1 50S ribosomal protein P1 [Methanolacinia paynteri] diamond 654 44.7 0.991051454138702 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanolacinia Methanolacinia paynteri
28582128 28582128 PRJNA1005695_P_NODE_14847_length_395_cov_3.142857_g13995_i0 PRJNA1005695 14847 395 3.142857 12.41428515 Candidatus Aenigmatarchaeota archaeon 3121606 Archaea Archaea 103 1.0499999999999999e-23   NR RLI97366.1 3121606 g13995 i0 51.7 0.660759493670886 87 42 66.1 0 395 135 222 308 RLI97366.1 MAG: carbamate kinase [Candidatus Aenigmatarchaeota archaeon] diamond 261 103 1 Archaea   Nanobdellati Candidatus Aenigmatarchaeota         Candidatus Aenigmatarchaeota archaeon
29686783 29686783 PRJNA1005695_P_NODE_7310_length_581_cov_2.129921_g6478_i0 PRJNA1005695 7310 581 2.129921 12.37484101 Thermoplasmata archaeon 1906666 Archaea Archaea 167 4.5e-46   NR MEM4728170.1 1906666 g6478 i0 50 1.85370051635112 164 79 84.2 2 490 2 5 166 MEM4728170.1 NAD(P)-dependent oxidoreductase [Thermoplasmata archaeon] diamond 1077 167 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon
30065961 30065961 PRJNA1005695_P_NODE_24372_length_304_cov_1.614719_g23520_i0 PRJNA1005695 24372 304 1.614719 4.90874576 Candidatus Thorarchaeota archaeon 2053491 Archaea Archaea 83.2 4.05e-17   NR TFG27730.1 2053491 g23520 i0 42.6 0.996710526315789 101 52 99.7 2 303 1 54 148 TFG27730.1 MAG: HAD family hydrolase [Candidatus Thorarchaeota archaeon] diamond 303 83.2 1 Archaea   Promethearchaeati Candidatus Thorarchaeota         Candidatus Thorarchaeota archaeon
30319396 30319396 PRJNA1005695_P_NODE_34772_length_253_cov_0.866667_g33920_i0 PRJNA1005695 34772 253 0.866667 2.19266751 archaeon 1906665 Archaea Archaea 133 4.639999999999999e-34   NR MDP2439142.1 1906665 g33920 i0 83.1 0.984189723320158 83 14 98.4 0 3 251 557 639 MDP2439142.1 colicin uptake protein [archaeon] diamond 249 133 1 Archaea               archaeon
30343500 30343500 PRJNA1005695_P_NODE_15472_length_386_cov_2.734824_g14620_i0 PRJNA1005695 15472 386 2.734824 10.55642064 Thermococcus 2263 Archaea Archaea 256 4.51e-76   NR WP_167728776.1 163002 g14620 i0 97.7 3.97927461139896 128 3 99.5 0 386 3 80 207 WP_167728776.1 DNA polymerase domain-containing protein [Thermococcus sp. 9N3] diamond 1536 256 1 Archaea   Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus sp. 9N3
30476974 30476974 PRJNA1005695_P_NODE_30333_length_271_cov_1.575758_g29481_i0 PRJNA1005695 30333 271 1.575758 4.27030418 Thermoplasmata archaeon 1906666 Archaea Archaea 80.9 1.78e-15   NR MEM4728170.1 1906666 g29481 i0 51.8 3.74169741697417 85 37 91.9 2 271 23 357 439 MEM4728170.1 NAD(P)-dependent oxidoreductase [Thermoplasmata archaeon] diamond 1014 80.9 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon
30508461 30508461 PRJNA1005695_P_NODE_38713_length_245_cov_0.866279_g37861_i0 PRJNA1005695 38713 245 0.866279 2.12238355 archaeon 1906665 Archaea Archaea 57 3.56e-7   NR MDP2435684.1 1906665 g37861 i0 50 0.73469387755102 60 26 69.8 2 67 237 1 59 MDP2435684.1 hydroxymethylglutaryl-CoA reductase [archaeon] diamond 180 57 1 Archaea               archaeon
30792725 30792725 PRJNA1005695_P_NODE_40034_length_242_cov_0.923077_g39182_i0 PRJNA1005695 40034 242 0.923077 2.23384634 archaeon 1906665 Archaea Archaea 100 5.77e-25   NR MDP2438175.1 1906665 g39182 i0 61.6 0.90495867768595 73 27 89.3 1 240 25 58 130 MDP2438175.1 protein disulfide isomerase family protein [archaeon] diamond 219 100 1 Archaea               archaeon
30880063 30880063 PRJNA1005695_P_NODE_36074_length_250_cov_0.881356_g35222_i0 PRJNA1005695 36074 250 0.881356 2.20339 Nanobdellati 1783276 Archaea Archaea 81.6 2.45e-17   NR MBT5424524.1 1906665 g35222 i0 57.1 4.308 70 30 84 0 15 224 89 158 MBT5424524.1 methyltransferase domain-containing protein [archaeon] diamond 1077 82 0.995121951219512 Archaea               archaeon
31235008 31235008 PRJNA1005695_P_NODE_38015_length_246_cov_0.901734_g37163_i0 PRJNA1005695 38015 246 0.901734 2.21826564 archaeon 1906665 Archaea Archaea 42.4 0.0455   NR RYY83889.1 1906665 g37163 i0 36.6 0.865853658536585 71 31 86.6 2 237 25 156 212 RYY83889.1 MAG: hypothetical protein EON63_10305 [archaeon] diamond 213 42.4 1 Archaea               archaeon
31259333 31259333 PRJNA1005695_P_NODE_39135_length_244_cov_0.912281_g38283_i0 PRJNA1005695 39135 244 0.912281 2.22596564 root 1 Root_unresolved Root_unresolved 94.4 1.38e-20   NR KHO52725.1 1579372 g38283 i0 51.9 3.01229508196721 81 37 99.6 1 2 244 291 369 KHO52725.1 MAG: ATP-dependent DNA helicase RecQ [archaeon GW2011_AR13] diamond 735 94.7 0.996832101372756 Archaea               archaeon GW2011_AR13
31646158 31646158 PRJNA1005695_P_NODE_31677_length_265_cov_1.619792_g30825_i0 PRJNA1005695 31677 265 1.619792 4.2924488 Thermoplasmatota archaeon 2806419 Archaea Archaea 43.5 0.0226   NR MDG6225782.1 2806419 g30825 i0 43.5 0.99622641509434 46 24 50.9 2 97 231 190 234 MDG6225782.1 metalloprotease family protein [Thermoplasmatota archaeon] diamond 264 43.5 1 Archaea   Methanobacteriati Thermoplasmatota         Thermoplasmatota archaeon
31994307 31994307 PRJNA1005695_P_NODE_19038_length_346_cov_2.025641_g18186_i0 PRJNA1005695 19038 346 2.025641 7.00871786 uncultured archaeon 115547 Archaea Archaea 43.5 0.0245   NR QBM02692.1 115547 g18186 i0 35.7 0.485549132947977 56 36 48.6 0 21 188 45 100 QBM02692.1 hypothetical protein [uncultured archaeon] diamond 168 43.5 1 Archaea               uncultured archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;