RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA1005695", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 7 ✖

tax_kingdom 1

  • Pseudomonadati · 7 ✖

bioproject 1

  • PRJNA1005695 · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9929088 9929088 PRJNA1005695_P_NODE_25308_length_298_cov_1.902222_g24456_i0 PRJNA1005695 25308 298 1.902222 5.66862156 Aliarcobacter 2321111 Bacteria Bacteria 464 2.9999999999999995e-126   NTclustered gi|1817415263|gb|CP026655.1| 28198 g24456 i0 94.702 374.671140939597 302 10 100 6 1 298 62655 62954 Aliarcobacter cryaerophilus strain G13RTA chromosome, complete genome blastn 111652 464 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter cryaerophilus
12479983 12479983 PRJNA1005695_P_NODE_34850_length_252_cov_3.614525_g33998_i0 PRJNA1005695 34850 252 3.614525 9.108603 Aliarcobacter 2321111 Bacteria Bacteria 466 6.89e-127   NTclustered gi|1231709647|emb|LT906455.1| 28197 g33998 i0 100 353.551587301587 252 0 100 0 1 252 851217 850966 Arcobacter butzleri strain NCTC12481 genome assembly, chromosome: 1 blastn 89095 466 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter butzleri
12907223 12907223 PRJNA1005695_P_NODE_26651_length_290_cov_1.313364_g25799_i0 PRJNA1005695 26651 290 1.313364 3.8087556 Campylobacter sp. CCUG 57310 2517362 Bacteria Bacteria 460 3.77e-125   NTclustered gi|1847337518|gb|CP053845.1| 2517362 g25799 i0 95.486 237.168965517241 288 13 99 0 1 288 86086 85799 Campylobacter sp. CCUG 57310 chromosome, complete genome blastn 68779 460 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter sp. CCUG 57310
18852890 18852890 PRJNA1005695_P_NODE_41835_length_227_cov_2.798701_g40983_i0 PRJNA1005695 41835 227 2.798701 6.35305127 root 1 Root_unresolved Root_unresolved 414 2.2399999999999998e-111   NTclustered gi|1145145120|gb|KX686749.1| 195 g40983 i0 99.559 103 227 1 100 0 1 227 46073 46299 Campylobacter coli strain Tx40 plasmid unnamed, complete sequence blastn 23381 414 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter coli
19279167 19279167 PRJNA1005695_P_NODE_37996_length_246_cov_0.901734_g37144_i0 PRJNA1005695 37996 246 0.901734 2.21826564 Sulfurimonas sediminis 2590020 Bacteria Bacteria 174 4.55e-39   NTclustered gi|1917893633|gb|CP041235.1| 2590020 g37144 i0 81.567 6.17479674796748 217 35 87 5 27 240 819963 819749 Sulfurimonas sediminis strain S2-6 chromosome, complete genome blastn 1519 174 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurimonadaceae Sulfurimonas Sulfurimonas sediminis
27982104 27982104 PRJNA1005695_P_NODE_24625_length_302_cov_2.681223_g23773_i0 PRJNA1005695 24625 302 2.681223 8.09729346 Campylobacter sp. 2 205 Bacteria Bacteria 83.6 6.77e-18   NR WP_214120692.1 2836735 g23773 i0 82 0.496688741721854 50 9 49.7 0 5 154 59 108 WP_214120692.1 hypothetical protein, partial [Campylobacter sp. 2018MI01] diamond 150 83.6 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter sp. 2018MI01
32902630 32902630 PRJNA1005695_P_NODE_30520_length_270_cov_1.583756_g29668_i0 PRJNA1005695 30520 270 1.583756 4.2761412 Pseudomonadati 3379134 Bacteria Bacteria 49.7 1.76e-4   NR WP_013681676.1 84405 g29668 i0 49 5.32222222222222 49 24 53.3 1 120 263 329 377 WP_013681676.1 HU family DNA-binding protein [Hippea maritima] diamond 1437 50.1 0.992015968063872 Bacteria   Pseudomonadati Campylobacterota Desulfurellia Desulfurellales Hippeaceae Hippea Hippea maritima

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;