RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA1005695", tax_kingdom = "Methanobacteriati" and tax_phylum = "Thermoplasmatota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Thermoplasmatota · 3 ✖

tax_kingdom 1

  • Methanobacteriati · 3 ✖

bioproject 1

  • PRJNA1005695 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29686783 29686783 PRJNA1005695_P_NODE_7310_length_581_cov_2.129921_g6478_i0 PRJNA1005695 7310 581 2.129921 12.37484101 Thermoplasmata archaeon 1906666 Archaea Archaea 167 4.5e-46   NR MEM4728170.1 1906666 g6478 i0 50 1.85370051635112 164 79 84.2 2 490 2 5 166 MEM4728170.1 NAD(P)-dependent oxidoreductase [Thermoplasmata archaeon] diamond 1077 167 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon
30476974 30476974 PRJNA1005695_P_NODE_30333_length_271_cov_1.575758_g29481_i0 PRJNA1005695 30333 271 1.575758 4.27030418 Thermoplasmata archaeon 1906666 Archaea Archaea 80.9 1.78e-15   NR MEM4728170.1 1906666 g29481 i0 51.8 3.74169741697417 85 37 91.9 2 271 23 357 439 MEM4728170.1 NAD(P)-dependent oxidoreductase [Thermoplasmata archaeon] diamond 1014 80.9 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon
31646158 31646158 PRJNA1005695_P_NODE_31677_length_265_cov_1.619792_g30825_i0 PRJNA1005695 31677 265 1.619792 4.2924488 Thermoplasmatota archaeon 2806419 Archaea Archaea 43.5 0.0226   NR MDG6225782.1 2806419 g30825 i0 43.5 0.99622641509434 46 24 50.9 2 97 231 190 234 MDG6225782.1 metalloprotease family protein [Thermoplasmatota archaeon] diamond 264 43.5 1 Archaea   Methanobacteriati Thermoplasmatota         Thermoplasmatota archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;