RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1005695", tax_clade = "Sar" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1005695 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28266028 28266028 PRJNA1005695_P_NODE_40946_length_235_cov_2.753086_g40094_i0 PRJNA1005695 40946 235 2.753086 6.4697521 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 111 1.3600000000000002e-27   NR CEP01219.1 37360 g40094 i0 61.5 0.995744680851064 78 30 99.6 0 235 2 9 86 CEP01219.1 hypothetical protein PBRA_001825 [Plasmodiophora brassicae] diamond 234 111 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
30508455 30508455 PRJNA1005695_P_NODE_33953_length_255_cov_2.021978_g33101_i0 PRJNA1005695 33953 255 2.021978 5.1560439 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 47.4 9.75e-4   NR CEO97750.1 37360 g33101 i0 36.7 1.15294117647059 60 37 70.6 1 74 253 84 142 CEO97750.1 hypothetical protein PBRA_005864 [Plasmodiophora brassicae] diamond 294 47.4 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
32650596 32650596 PRJNA1005695_P_NODE_35960_length_250_cov_1.429379_g35108_i0 PRJNA1005695 35960 250 1.429379 3.5734475 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 55.8 9.94e-7   NR MES1919020.1 126728 g35108 i0 38.9 2.376 72 29 75.6 3 61 249 371 436 MES1919020.1 Elongator subunit elp2 [Bonamia ostreae] diamond 594 55.8 1 Eukaryota Sar   Endomyxa Ascetosporea Haplosporida   Bonamia Bonamia ostreae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;