RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1004255" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1004255 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9080747 9080747 PRJNA1004255_S_NODE_5568_length_253_cov_3.776190_g5360_i0 PRJNA1004255 5568 253 3.77619 9.5537607 Treponema parvum 138851 Bacteria Bacteria 302 2.06e-77   NTclustered gi|2023444933|gb|CP054257.1| 138851 g5360 i0 88.189 113.916996047431 254 28 100 2 1 253 1516604 1516856 Treponema parvum strain ATCC 700773 chromosome, complete genome blastn 28821 302 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema parvum
19278851 19278851 PRJNA1004255_S_NODE_7456_length_227_cov_2.043478_g7248_i0 PRJNA1004255 7456 227 2.043478 4.63869506 Treponema denticola 158 Bacteria Bacteria 414 2.2399999999999998e-111   NTclustered gi|2265190365|gb|CP054477.1| 158 g7248 i0 99.559 193.251101321586 227 1 100 0 1 227 1480497 1480723 Treponema denticola strain OMZ 823 chromosome, complete genome blastn 43868 414 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema denticola

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;