RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1004255" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1004255 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11631854 11631854 PRJNA1004255_S_NODE_7790_length_223_cov_3.438889_g7582_i0 PRJNA1004255 7790 223 3.438889 7.66872247 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 261 3.02e-65   NTclustered gi|695467755|ref|XM_009541406.1| 67593 g7582 i0 87.946 92.7892376681614 224 23 100 4 1 223 643 863 Phytophthora sojae hypothetical protein mRNA blastn 20692 261 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
25227202 25227202 PRJNA1004255_S_NODE_8640_length_214_cov_2.444444_g8432_i0 PRJNA1004255 8640 214 2.444444 5.23111016 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 368 1.65e-97   NTclustered gi|90655130|gb|DQ361251.1| 4784 g8432 i0 97.664 100 214 5 100 0 1 214 235 448 Phytophthora capsici large subunit ribosomal RNA gene, partial sequence blastn 21400 368 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;