RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1004255" and tax_phylum = "Nitrospirota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1004255 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10356421 10356421 PRJNA1004255_S_NODE_3789_length_289_cov_2.373984_g3581_i0 PRJNA1004255 3789 289 2.373984 6.86081376 Nitrospira sp. 70125 Bacteria Bacteria 455 1.7400000000000003e-123   NTclustered gi|2290907019|gb|CP060499.1| 70125 g3581 i0 95.172 107.910034602076 290 10 100 4 1 289 2684489 2684203 MAG: Nitrospira sp. isolate DH1 chromosome, complete genome blastn 31186 455 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
21830064 21830064 PRJNA1004255_S_NODE_4618_length_270_cov_5.585903_g4410_i0 PRJNA1004255 4618 270 5.585903 15.0819381 Nitrospira sp. 70125 Bacteria Bacteria 438 1.6299999999999993e-118   NTclustered gi|2290907019|gb|CP060499.1| 70125 g4410 i0 95.926 125.559259259259 270 11 100 0 1 270 2683255 2683524 MAG: Nitrospira sp. isolate DH1 chromosome, complete genome blastn 33901 438 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;