RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1004255" and tax_phylum = "Mucoromycota"

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tax_superkingdom 1

tax_phylum 1

  • Mucoromycota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1004255 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13754392 13754392 PRJNA1004255_S_NODE_3711_length_290_cov_73.627530_g3503_i0 PRJNA1004255 3711 290 73.62753 213.519837 Fungi 4751 Fungi Fungi 481 2.89e-131   NTclustered gi|658131632|emb|HF968958.1| 4874 g3503 i0 100 126.731034482759 260 0 90 0 31 290 1997 2256 Gigaspora margarita partial 28S rRNA gene, strain BEG34, isolate spore 4, clone BL2_6_26 blastn 36752 481 1 Eukaryota Opisthokonta Fungi Mucoromycota Glomeromycetes Diversisporales Gigasporaceae Gigaspora Gigaspora margarita
20554414 20554414 PRJNA1004255_S_NODE_17017_length_157_cov_16.614035_g16809_i0 PRJNA1004255 17017 157 16.614035 26.08403495 Mucor mucedo 29922 Fungi Fungi 58.4 2.78e-4   NTclustered gi|2324075884|ref|XM_051603668.1| 29922 g16809 i0 94.737 0.24203821656051 38 0 24 1 50 87 253 218 Mucor mucedo uncharacterized protein (EV154DRAFT_529412), mRNA blastn 38 58.4 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Mucoraceae Mucor Mucor mucedo

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;