RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1004255" and tax_phylum = "Campylobacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1004255 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13754405 13754405 PRJNA1004255_S_NODE_5971_length_247_cov_2.431373_g5763_i0 PRJNA1004255 5971 247 2.431373 6.00549131 root 1 Root_unresolved Root_unresolved 457 4.05e-124   NTclustered gi|1226876681|gb|CP022559.1| 197 g5763 i0 100 100 247 0 100 0 1 247 698387 698141 Campylobacter jejuni strain 11168H/araE chromosome, complete genome blastn 24700 457 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
18005018 18005018 PRJNA1004255_S_NODE_6375_length_240_cov_23.461929_g6167_i0 PRJNA1004255 6375 240 23.461929 56.3086296 Malaciobacter marinus 505249 Bacteria Bacteria 52.8 0.022   NTclustered gi|1474785413|gb|CP032101.1| 505249 g6167 i0 100 0.116666666666667 28 0 12 0 119 146 1771291 1771318 Malaciobacter marinus strain JCM 15502 chromosome, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Malaciobacter Malaciobacter marinus
30413894 30413894 PRJNA1004255_S_NODE_12353_length_183_cov_3.021429_g12145_i0 PRJNA1004255 12353 183 3.021429 5.52921507 Campylobacter jejuni 197 Bacteria Bacteria 40.4 0.0237   NR EOH1988375.1 197 g12145 i0 50 0.918032786885246 56 21 80.3 2 2 148 26 81 EOH1988375.1 hypothetical protein [Campylobacter jejuni] diamond 168 40.4 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
31614651 31614651 PRJNA1004255_S_NODE_5096_length_261_cov_5.380734_g4888_i0 PRJNA1004255 5096 261 5.380734 14.04371574 Helicobacter pylori 210 Bacteria Bacteria 87.4 4.81e-20   NR WP_322538264.1 210 g4888 i0 50 1.97701149425287 86 42 97.7 1 260 6 15 100 WP_322538264.1 hypothetical protein, partial [Helicobacter pylori] diamond 516 87.4 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;