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contig_metadata

12 rows where bioproject = "PRJNA1004255", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 12 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 12 ✖

bioproject 1

  • PRJNA1004255 · 12 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1428031 1428031 PRJNA1004255_S_NODE_7062_length_231_cov_7.127660_g6854_i0 PRJNA1004255 7062 231 7.12766 16.4648946 Caenorhabditis elegans 6239 Nematoda Nematoda 427 2.9399999999999998e-115   NTclustered gi|1879207294|gb|MT797802.1| 6239 g6854 i0 100 91.4978354978355 231 0 100 0 1 231 233 3 Caenorhabditis elegans isolate KZN large subunit ribosomal RNA gene, partial sequence blastn 21136 427 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
2703455 2703455 PRJNA1004255_S_NODE_13343_length_177_cov_1.753731_g13135_i0 PRJNA1004255 13343 177 1.753731 3.10410387 Caenorhabditis elegans 6239 Nematoda Nematoda 281 1.75e-71   NTclustered gi|2056519505|gb|MZ435570.1| 6239 g13135 i0 100 14.5819209039548 152 0 86 0 26 177 77 228 Caenorhabditis elegans voucher KTnemPosCtrl internal transcribed spacer 2 and large subunit ribosomal RNA gene, partial sequence blastn 2581 281 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
5256155 5256155 PRJNA1004255_S_NODE_2065_length_352_cov_15.268608_g1857_i0 PRJNA1004255 2065 352 15.268608 53.74550016 Caenorhabditis elegans 6239 Nematoda Nematoda 645 1.2e-180   NTclustered gi|25167357|ref|NR_000053.1| 6239 g1857 i0 99.716 96.9403409090909 352 1 100 0 1 352 943 592 Caenorhabditis elegans 18S ribosomal RNA (rrn-1.1), rRNA blastn 34123 645 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
9080710 9080710 PRJNA1004255_S_NODE_17048_length_157_cov_9.192982_g16840_i0 PRJNA1004255 17048 157 9.192982 14.43298174 Caenorhabditis elegans 6239 Nematoda Nematoda 291 2.52e-74   NTclustered gi|2056519505|gb|MZ435570.1| 6239 g16840 i0 100 14.8917197452229 157 0 100 0 1 157 201 357 Caenorhabditis elegans voucher KTnemPosCtrl internal transcribed spacer 2 and large subunit ribosomal RNA gene, partial sequence blastn 2338 291 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
9080760 9080760 PRJNA1004255_S_NODE_9088_length_209_cov_5.102410_g8880_i0 PRJNA1004255 9088 209 5.10241 10.6640369 Caenorhabditis elegans 6239 Nematoda Nematoda 387 4.42e-103   NTclustered gi|1972264646|ref|NM_066119.9| 6239 g8880 i0 100 35.6124401913876 209 0 100 0 1 209 1257 1465 Caenorhabditis elegans Elongation factor 1-alpha (eef-1A.1), mRNA blastn 7443 387 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
12479829 12479829 PRJNA1004255_S_NODE_7850_length_222_cov_9.335196_g7642_i0 PRJNA1004255 7850 222 9.335196 20.72413512 Caenorhabditis 6237 Nematoda Nematoda 283 6.409999999999999e-72   NTclustered gi|356605872|gb|JN636061.1| 6238 g7642 i0 100 70.054054054054 153 0 69 0 45 197 1300 1148 Caenorhabditis briggsae 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 15552 283 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
14181894 14181894 PRJNA1004255_S_NODE_10032_length_201_cov_1.784810_g9824_i0 PRJNA1004255 10032 201 1.78481 3.5874681 Rubzovinema sp. EIK-2013 1400286 Nematoda Nematoda 248 2.08e-61   NTclustered gi|543891909|gb|KF155282.1| 1400286 g9824 i0 90.052 66.6318407960199 191 19 95 0 10 200 4363 4553 Rubzovinema sp. EIK-2013 isolate A.r. 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 13393 248 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neotylenchidae Rubzovinema Rubzovinema sp. EIK-2013
15455918 15455918 PRJNA1004255_S_NODE_5093_length_261_cov_5.981651_g4885_i0 PRJNA1004255 5093 261 5.981651 15.61210911 Caenorhabditis elegans 6239 Nematoda Nematoda 483 7.12e-132   NTclustered gi|1972267336|ref|NM_069785.8| 6239 g4885 i0 100 5.38314176245211 261 0 100 0 1 261 257 517 Caenorhabditis elegans Small ribosomal subunit protein uS17 (rps-11), mRNA blastn 1405 483 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
19278855 19278855 PRJNA1004255_S_NODE_7856_length_222_cov_6.793296_g7648_i0 PRJNA1004255 7856 222 6.793296 15.08111712 Caenorhabditis elegans 6239 Nematoda Nematoda 411 2.8199999999999996e-110   NTclustered gi|1831506465|ref|NM_001380979.1| 6239 g7648 i0 100 28.8333333333333 222 0 100 0 1 222 2514 2293 Caenorhabditis elegans Elongation factor 2 (eef-2), partial mRNA blastn 6401 411 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
20554398 20554398 PRJNA1004255_S_NODE_12817_length_180_cov_2.744526_g12609_i0 PRJNA1004255 12817 180 2.744526 4.9401468 Caenorhabditis elegans 6239 Nematoda Nematoda 333 4.87e-87   NTclustered gi|1734332489|ref|NM_070479.2| 6239 g12609 i0 100 11.3555555555556 180 0 100 0 1 180 213 34 Caenorhabditis elegans SMP domain-containing protein (Y105C5A.12), mRNA blastn 2044 333 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
24379243 24379243 PRJNA1004255_S_NODE_13620_length_175_cov_4.272727_g13412_i0 PRJNA1004255 13620 175 4.272727 7.47727225 Caenorhabditis elegans 6239 Nematoda Nematoda 324 2.83e-84   NTclustered gi|2814962|emb|Z82285.1| 6239 g13412 i0 100 6.65142857142857 175 0 100 0 1 175 739 913 Caenorhabditis elegans Cosmid T28F3, complete sequence blastn 1164 324 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
24379313 24379313 PRJNA1004255_S_NODE_8400_length_216_cov_5.832370_g8192_i0 PRJNA1004255 8400 216 5.83237 12.5979192 Caenorhabditis elegans 6239 Nematoda Nematoda 394 2.75e-105   NTclustered gi|413006566|emb|Z92784.2| 6239 g8192 i0 99.537 91.3935185185185 216 1 100 0 1 216 28681 28896 Caenorhabditis elegans Cosmid F31C3, complete sequence blastn 19741 394 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;