RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1004255", tax_clade = "Opisthokonta" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 2 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 2 ✖

bioproject 1

  • PRJNA1004255 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11631860 11631860 PRJNA1004255_S_NODE_8730_length_213_cov_2.094118_g8522_i0 PRJNA1004255 8730 213 2.094118 4.46047134 Idiosepius paradoxus 294707 Mollusca Mollusca 58.4 4.03e-4   NTclustered gi|325504932|dbj|AB586703.1| 294707 g8522 i0 94.737 0.967136150234742 38 0 17 2 177 213 44 8 Idiosepius paradoxus cenG mRNA for centaurin gamma homolog, complete cds blastn 206 58.4 1 Eukaryota Opisthokonta Metazoa Mollusca Cephalopoda   Idiosepiidae Idiosepius Idiosepius paradoxus
23105513 23105513 PRJNA1004255_S_NODE_5179_length_260_cov_2.557604_g4971_i0 PRJNA1004255 5179 260 2.557604 6.6497704 Bradybaena similaris 145626 Mollusca Mollusca 60.2 1.42e-4   NTclustered gi|2912998575|dbj|AP039604.1| 145626 g4971 i0 97.222 3.13461538461538 36 0 13 1 207 241 14169038 14169003 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 23, sequence blastn 815 60.2 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;