RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1002816", tax_kingdom = "Bacillati" and tax_phylum = "Cyanobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Cyanobacteriota · 2 ✖

tax_kingdom 1

  • Bacillati · 2 ✖

bioproject 1

  • PRJNA1002816 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28265984 28265984 PRJNA1002816_P_NODE_18946_length_247_cov_0.885057_g18786_i0 PRJNA1002816 18946 247 0.885057 2.18609079 Cyanobacteria bacterium P01_G01_bin.54 3023307 Bacteria Bacteria 49.7 1.05e-4   NR MEM8642542.1 3023307 g18786 i0 32.1 0.947368421052632 78 49 89.9 4 2 223 83 160 MEM8642542.1 alpha-ketoglutarate-dependent dioxygenase AlkB [Cyanobacteria bacterium P01_G01_bin.54] diamond 234 49.7 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota         Cyanobacteria bacterium P01_G01_bin.54
32469112 32469112 PRJNA1002816_P_NODE_13419_length_301_cov_0.956140_g13259_i0 PRJNA1002816 13419 301 0.95614 2.8779814 Nodosilinea sp. PGN35 3020489 Bacteria Bacteria 71.6 4.88e-12   NR WP_275334669.1 3020489 g13259 i0 56 0.498338870431894 50 22 49.8 0 164 15 365 414 WP_275334669.1 hypothetical protein [Nodosilinea sp. PGN35] diamond 150 71.6 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Nodosilineales Nodosilineaceae Nodosilinea Nodosilinea sp. PGN35

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;