RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where bioproject = "PRJNA1002816" and tax_clade = "core chlorophytes"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 7 ✖

bioproject 1

  • PRJNA1002816 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9080414 9080414 PRJNA1002816_P_NODE_20948_length_241_cov_0.916667_g20788_i0 PRJNA1002816 20948 241 0.916667 2.20916747 Ostreobium quekettii 121088 Plants Plants 100 2.36e-22   NR CAD7703754.1 121088 g20788 i0 64 4.81742738589212 75 27 93.4 0 234 10 391 465 CAD7703754.1 unnamed protein product, partial [Ostreobium quekettii] diamond 1161 100 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Ostreobiaceae Ostreobium Ostreobium quekettii
11631459 11631459 PRJNA1002816_P_NODE_18690_length_248_cov_0.880000_g18530_i0 PRJNA1002816 18690 248 0.88 2.1824 Dunaliella salina 3046 Plants Plants 248 2.67e-61   NTclustered gi|2599103|gb|AF028833.1|AF028833 3046 g18530 i0 85.081 2.89112903225806 248 32 99 5 3 248 543 299 Dunaliella salina 60S ribosomal protein (DSRP1) mRNA, complete cds blastn 717 248 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Dunaliellaceae Dunaliella Dunaliella salina
25227067 25227067 PRJNA1002816_P_NODE_11000_length_335_cov_2.007634_g10840_i0 PRJNA1002816 11000 335 2.007634 6.7255739 root 1 Root_unresolved Root_unresolved 170 1.95e-47   NR KAI8467676.1 39955 g10840 i0 73.9 76.9970149253731 111 29 99.4 0 3 335 383 493 KAI8467676.1 MAG: ATP synthase subunit beta, mitochondrial [Monoraphidium minutum] diamond 25794 170 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium minutum
26615314 26615314 PRJNA1002816_P_NODE_17821_length_250_cov_0.870056_g17661_i0 PRJNA1002816 17821 250 0.870056 2.17514 Eukaryota 2759 Plants Plants 84.3 8.5e-17   NR KAJ9523208.1 44745 g17661 i0 57.7 5.076 71 30 85.2 0 38 250 380 450 KAJ9523208.1 hypothetical protein QJQ45_023998 [Haematococcus lacustris] diamond 1269 85.1 0.990599294947121 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris
29245032 29245032 PRJNA1002816_P_NODE_15049_length_280_cov_1.198068_g14889_i0 PRJNA1002816 15049 280 1.198068 3.3545904 Chlamydomonas incerta 51695 Plants Plants 150 2.67e-40   NR KAG2445813.1 51695 g14889 i0 77 0.932142857142857 87 20 93.2 0 2 262 337 423 KAG2445813.1 hypothetical protein HXX76_000417 [Chlamydomonas incerta] diamond 261 150 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas incerta
29426793 29426793 PRJNA1002816_P_NODE_11209_length_332_cov_1.436293_g11049_i0 PRJNA1002816 11209 332 1.436293 4.76849276 Chlamydomonadaceae 3051 Plants Plants 149 1.53e-39   NR GAX76808.1 1157962 g11049 i0 69.7 7.88855421686747 109 33 98.5 0 331 5 422 530 GAX76808.1 hypothetical protein CEUSTIGMA_g4254.t1 [Chlamydomonas eustigma] diamond 2619 149 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas eustigma
31867570 31867570 PRJNA1002816_P_NODE_18197_length_249_cov_0.875000_g18037_i0 PRJNA1002816 18197 249 0.875 2.17875 Monoraphidium neglectum 145388 Plants Plants 45.8 0.00329   NR XP_013900854.1 145388 g18037 i0 40.8 0.590361445783133 49 27 59 1 86 232 155 201 XP_013900854.1 hypothetical protein MNEG_6122 [Monoraphidium neglectum] diamond 147 45.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;