RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA1002816", tax_clade = "Sar" and tax_phylum = "Bacillariophyta"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1002816 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
152940 152940 PRJNA1002816_P_NODE_20401_length_242_cov_0.964497_g20241_i0 PRJNA1002816 20401 242 0.964497 2.33408274 Naviculales 38748 SAR_Eukaryotes SAR_Eukaryotes 113 7.8499999999999995e-28   NR XP_002185755.1 556484 g20241 i0 74.3 12.1487603305785 70 18 86.8 0 240 31 175 244 XP_002185755.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] diamond 2940 113 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
1000860 1000860 PRJNA1002816_P_NODE_16461_length_263_cov_1.215789_g16301_i0 PRJNA1002816 16461 263 1.215789 3.19752507 Cyclotella cryptica 29204 SAR_Eukaryotes SAR_Eukaryotes 161 1.4599999999999999e-46   NR AAX09600.1 29204 g16301 i0 85.1 1.98479087452471 87 13 99.2 0 261 1 168 254 AAX09600.1 elongation factor 1 alpha, partial [Cyclotella cryptica] diamond 522 161 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Stephanodiscales Stephanodiscaceae Cyclotella Cyclotella cryptica
27950515 27950515 PRJNA1002816_P_NODE_14845_length_282_cov_2.387560_g14685_i0 PRJNA1002816 14845 282 2.38756 6.7329192 Mayamaea pseudoterrestris 2872254 SAR_Eukaryotes SAR_Eukaryotes 124 2.85e-34   NR GKY93202.1 2872254 g14685 i0 61.5 5.74468085106383 91 35 96.8 0 8 280 3 93 GKY93202.1 hypothetical protein MPSEU_000288000 [Mayamaea pseudoterrestris] diamond 1620 124 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Mayamaea Mayamaea pseudoterrestris
31544066 31544066 PRJNA1002816_P_NODE_18936_length_247_cov_0.885057_g18776_i0 PRJNA1002816 18936 247 0.885057 2.18609079 Bacillariaceae 33852 SAR_Eukaryotes SAR_Eukaryotes 88.6 2.87e-18   NR CAJ1953244.1 2856 g18776 i0 69.1 4.20242914979757 55 17 66.8 0 173 9 1185 1239 CAJ1953244.1 unnamed protein product [Cylindrotheca closterium] diamond 1038 88.6 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Cylindrotheca Cylindrotheca closterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;