RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1002816", tax_clade = "Sar" and tax_phylum = "Apicomplexa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1002816 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7805503 7805503 PRJNA1002816_P_NODE_21107_length_229_cov_2.487179_g20947_i0 PRJNA1002816 21107 229 2.487179 5.69563991 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 113 9.24e-21   NTclustered gi|820692312|tpe|LN714484.1| 572307 g20947 i0 78.824 16.1441048034934 170 34 74 2 53 221 2914748 2914580 TPA_asm: Neospora caninum Liverpool, chromosome chrIX, complete genome blastn 3697 113 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum
11631490 11631490 PRJNA1002816_P_NODE_20130_length_243_cov_0.905882_g19970_i0 PRJNA1002816 20130 243 0.905882 2.20129326 Plasmodium chabaudi 5825 SAR_Eukaryotes SAR_Eukaryotes 147 9.77e-31   NTclustered gi|1027954050|ref|XM_736288.2| 31271 g19970 i0 80.095 6.36213991769547 211 30 86 10 36 243 1088 887 Plasmodium chabaudi chabaudi heat shock protein 90, putative (PCHAS_0806000), partial mRNA blastn 1546 147 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium chabaudi
19278361 19278361 PRJNA1002816_P_NODE_13836_length_295_cov_1.040541_g13676_i0 PRJNA1002816 13836 295 1.040541 3.06959595 Plasmodium chabaudi 5825 SAR_Eukaryotes SAR_Eukaryotes 206 1.99e-48   NTclustered gi|160347|gb|J04005.1|PFAHSP70AC 5825 g13676 i0 81.855 62.0067796610169 248 41 83 3 33 278 479 234 P.chabaudi hsp70 gene encoding a heat shock protein blastn 18292 206 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium chabaudi
28479862 28479862 PRJNA1002816_P_NODE_18846_length_247_cov_0.885057_g18686_i0 PRJNA1002816 18846 247 0.885057 2.18609079 Eimeriidae 5799 SAR_Eukaryotes SAR_Eukaryotes 128 2.22e-36   NR XP_013439111.1 51315 g18686 i0 76.6 1.87044534412955 77 18 93.5 0 15 245 10 86 XP_013439111.1 hypothetical protein, conserved [Eimeria necatrix] diamond 462 129 0.992248062015504 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria necatrix

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;