RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1002816", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA1002816 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30192357 30192357 PRJNA1002816_P_NODE_9472_length_364_cov_1.003436_g9312_i0 PRJNA1002816 9472 364 1.003436 3.65250704 Simkania sp. 34094 Bacteria Bacteria 99 1.2800000000000001e-22   NR MCB1084310.1 34094 g9312 i0 70.8 0.535714285714286 65 19 53.6 0 6 200 108 172 MCB1084310.1 hypothetical protein [Simkania sp.] diamond 195 99 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae Simkania Simkania sp.
32342566 32342566 PRJNA1002816_P_NODE_11079_length_334_cov_1.440613_g10919_i0 PRJNA1002816 11079 334 1.440613 4.81164742 Simkania sp. 34094 Bacteria Bacteria 115 3.5600000000000003e-29   NR MCB1084310.1 34094 g10919 i0 69.1 0.727544910179641 81 25 72.8 0 5 247 92 172 MCB1084310.1 hypothetical protein [Simkania sp.] diamond 243 115 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae Simkania Simkania sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;