RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1002816" and tax_clade = "Bacteria candidate phyla"

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analysis 2

tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 4 ✖

bioproject 1

  • PRJNA1002816 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7805474 7805474 PRJNA1002816_P_NODE_19647_length_245_cov_0.866279_g19487_i0 PRJNA1002816 19647 245 0.866279 2.12238355 Candidatus Aminicenantes bacterium 2052149 Bacteria Bacteria 56.5 0.002   NTclustered gi|2107803655|gb|CP070825.1| 2052149 g19487 i0 100 0.122448979591837 30 0 12 0 203 232 2306802 2306773 MAG: Candidatus Aminicenantes bacterium isolate bin112 chromosome blastn 30 56.5 1 Bacteria Bacteria candidate phyla   Candidatus Aminicenantota         Candidatus Aminicenantes bacterium
27255643 27255643 PRJNA1002816_P_NODE_10483_length_344_cov_2.095941_g10323_i0 PRJNA1002816 10483 344 2.095941 7.21003704 Candidatus Dojkabacteria bacterium 2099670 Bacteria Bacteria 224 3.7200000000000005e-73   NR HRO65834.1 2099670 g10323 i0 99.1 0.98546511627907 113 1 98.5 0 339 1 1 113 HRO65834.1 uL15 family ribosomal protein [Candidatus Dojkabacteria bacterium] diamond 339 224 1 Bacteria Bacteria candidate phyla             Candidatus Dojkabacteria bacterium
28140149 28140149 PRJNA1002816_P_NODE_20505_length_242_cov_0.911243_g20345_i0 PRJNA1002816 20505 242 0.911243 2.20520806 Patescibacteria group bacterium 2052139 Bacteria Bacteria 55.1 1.61e-6   NR MEK7590679.1 2052139 g20345 i0 58.1 0.533057851239669 43 18 53.3 0 238 110 70 112 MEK7590679.1 NADP-dependent phosphogluconate dehydrogenase [Patescibacteria group bacterium] diamond 129 55.1 1 Bacteria Bacteria candidate phyla             Patescibacteria group bacterium
29718355 29718355 PRJNA1002816_P_NODE_14530_length_286_cov_1.553991_g14370_i0 PRJNA1002816 14530 286 1.553991 4.44441426 Candidatus Doudnabacteria bacterium 2052150 Bacteria Bacteria 52.4 6.03e-6   NR MFA4880568.1 2052150 g14370 i0 37.8 3.81818181818182 90 47 91.3 4 262 2 3 86 MFA4880568.1 dUTP diphosphatase [Candidatus Doudnabacteria bacterium] diamond 1092 52.4 1 Bacteria Bacteria candidate phyla   Candidatus Doudnaibacteriota         Candidatus Doudnabacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;