RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1002816", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 6 ✖

tax_clade 1

  • Amoebozoa · 6 ✖

bioproject 1

  • PRJNA1002816 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5255768 5255768 PRJNA1002816_P_NODE_18665_length_248_cov_0.880000_g18505_i0 PRJNA1002816 18665 248 0.88 2.1824 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 187 5.8899999999999985e-43   NTclustered gi|470420395|ref|XM_004337241.1| 1257118 g18505 i0 82.11 87.8064516129032 218 39 88 0 1 218 218 1 Acanthamoeba castellanii str. Neff eukaryotic translation elongation factor 2, putative (ACA1_220140), partial mRNA blastn 21776 187 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
9080499 9080499 PRJNA1002816_P_NODE_7128_length_424_cov_0.877493_g6968_i0 PRJNA1002816 7128 424 0.877493 3.72057032 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 233 3.3e-73   NR XP_004356673.1 1257118 g6968 i0 79.4 3 141 29 99.8 0 423 1 25 165 XP_004356673.1 actinrelated protein 2 isoform 4, putative [Acanthamoeba castellanii str. Neff] diamond 1272 233 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
13754320 13754320 PRJNA1002816_P_NODE_5891_length_467_cov_2.477157_g5731_i0 PRJNA1002816 5891 467 2.477157 11.56832319 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 309 2.44e-79   NTclustered gi|470420192|ref|XM_004337221.1| 1257118 g5731 i0 89.113 53.7558886509636 248 27 53 0 220 467 1124 877 Acanthamoeba castellanii str. Neff actin-1, putative (ACA1_219820), partial mRNA blastn 25104 309 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29150654 29150654 PRJNA1002816_P_NODE_18029_length_250_cov_0.870056_g17869_i0 PRJNA1002816 18029 250 0.870056 2.17514 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 91.7 2.46e-19   NR XP_004341806.1 1257118 g17869 i0 54 1.044 87 33 96 1 249 10 251 337 XP_004341806.1 Prokumamolisin, activation domain containing protein [Acanthamoeba castellanii str. Neff] diamond 261 91.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31361784 31361784 PRJNA1002816_P_NODE_18536_length_248_cov_0.880000_g18376_i0 PRJNA1002816 18536 248 0.88 2.1824 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 48.5 2.56e-4   NR XP_004352904.1 1257118 g18376 i0 71 0.375 31 9 37.5 0 246 154 187 217 XP_004352904.1 beta1 proteasome1D, putative [Acanthamoeba castellanii str. Neff] diamond 93 48.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31962586 31962586 PRJNA1002816_P_NODE_13318_length_302_cov_1.340611_g13158_i0 PRJNA1002816 13318 302 1.340611 4.04864522 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 134 4.41e-35   NR XP_004349632.1 1257118 g13158 i0 62 0.993377483443709 100 38 99.3 0 1 300 73 172 XP_004349632.1 calreticulin, putative [Acanthamoeba castellanii str. Neff] diamond 300 134 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;