RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA1002570", tax_phylum = "Thermoplasmatota" and tax_superkingdom = "Archaea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Archaea · 2 ✖

tax_phylum 1

  • Thermoplasmatota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1002570 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28676760 28676760 PRJNA1002570_P_NODE_3147_length_603_cov_2.873585_g2957_i0 PRJNA1002570 3147 603 2.873585 17.32771755 Thermoplasmatota archaeon 2806419 Archaea Archaea 122 1.18e-29   NR MFO8050666.1 2806419 g2957 i0 39.7 2.04477611940298 204 110 99 8 6 602 63 258 MFO8050666.1 hypothetical protein [Thermoplasmatota archaeon] diamond 1233 122 1 Archaea   Methanobacteriati Thermoplasmatota         Thermoplasmatota archaeon
28897534 28897534 PRJNA1002570_P_NODE_35748_length_251_cov_1.713483_g35553_i0 PRJNA1002570 35748 251 1.713483 4.30084233 Thermoplasmata archaeon 1906666 Archaea Archaea 115 1.87e-28   NR HEV8049819.1 1906666 g35553 i0 67.9 4.82868525896414 81 26 96.8 0 246 4 123 203 HEV8049819.1 hypothetical protein [Thermoplasmata archaeon] diamond 1212 115 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;