RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1002570", tax_kingdom = "Fungi" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 2 ✖

tax_kingdom 1

  • Fungi · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1002570 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27382176 27382176 PRJNA1002570_P_NODE_12463_length_338_cov_1.981132_g12268_i0 PRJNA1002570 12463 338 1.981132 6.69622616 Gaertneriomyces semiglobifer 109897 Fungi Fungi 84.3 2.72e-16   NR KAI9014674.1 109897 g12268 i0 43.7 0.914201183431953 103 45 79.9 2 338 69 415 517 KAI9014674.1 BCS1 N terminal-domain-containing protein [Gaertneriomyces semiglobifer] diamond 309 84.3 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Gaertneriomyces Gaertneriomyces semiglobifer
30255895 30255895 PRJNA1002570_P_NODE_34792_length_254_cov_1.602210_g34597_i0 PRJNA1002570 34792 254 1.60221 4.0696134 Batrachochytrium salamandrivorans 1357716 Fungi Fungi 45.4 0.00498   NR KAH9251695.1 1357716 g34597 i0 31.8 1.00393700787402 85 57 99.2 1 254 3 1297 1381 KAH9251695.1 hypothetical protein BASA81_010365 [Batrachochytrium salamandrivorans] diamond 255 45.4 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium salamandrivorans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;