RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1002570", tax_clade = "Sar" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1002570 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26654232 26654232 PRJNA1002570_P_NODE_15101_length_311_cov_0.970588_g14906_i0 PRJNA1002570 15101 311 0.970588 3.01852868 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 85.5 2.32e-17   NR CEO95246.1 37360 g14906 i0 37.6 1.94855305466238 101 61 95.5 2 310 14 199 299 CEO95246.1 hypothetical protein PBRA_004012 [Plasmodiophora brassicae] diamond 606 85.5 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
29686699 29686699 PRJNA1002570_P_NODE_29050_length_270_cov_1.172589_g28855_i0 PRJNA1002570 29050 270 1.172589 3.1659903 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 89.7 1.55e-18   NR AVG22657.1 37360 g28855 i0 49.4 1.97777777777778 89 45 98.9 0 269 3 781 869 AVG22657.1 MAPKKK9 [Plasmodiophora brassicae] diamond 534 89.7 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;